Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1171
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 66 2e-11
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 66 2e-11
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 66 2e-11
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 48 9e-06
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 47 1e-05
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 47 1e-05
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 47 1e-05
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 45 6e-05
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 45 6e-05
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 39 0.004
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 36 0.037
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 34 0.085
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 34 0.11
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 34 0.11
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 34 0.11
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 33 0.26
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 33 0.26
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 33 0.26
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 33 0.26
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 33 0.26
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 33 0.26
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 33 0.26
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 31 1.0
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 30 1.4
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 30 1.4
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 30 1.4
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 30 1.4
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 30 1.8
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 30 1.8
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 30 1.8
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 29 3.2
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 29 4.2
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.4
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 28 7.4
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 28 7.4
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 28 7.4
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 28 7.4
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 28 7.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.4
Z75548-1|CAA99911.1| 776|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z50109-6|CAA90439.2| 344|Caenorhabditis elegans Hypothetical pr... 27 9.8
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 66.1 bits (154), Expect = 2e-11
Identities = 25/57 (43%), Positives = 42/57 (73%)
Frame = -3
Query: 674 DXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEIS 504
+ E FD++G++ VWVA PPGFAF+E+++++ AEDA A++G+ + G +VE+S
Sbjct: 18 ELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 66.1 bits (154), Expect = 2e-11
Identities = 25/57 (43%), Positives = 42/57 (73%)
Frame = -3
Query: 674 DXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEIS 504
+ E FD++G++ VWVA PPGFAF+E+++++ AEDA A++G+ + G +VE+S
Sbjct: 18 ELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 66.1 bits (154), Expect = 2e-11
Identities = 25/57 (43%), Positives = 42/57 (73%)
Frame = -3
Query: 674 DXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEIS 504
+ E FD++G++ VWVA PPGFAF+E+++++ AEDA A++G+ + G +VE+S
Sbjct: 18 ELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = -3
Query: 668 EREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
E F G + S+W+A PPGFAF+ F+ A DA +NG ++ KVE+
Sbjct: 45 EAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = -3
Query: 683 KKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
++ D ER YGK+N++ + GFAF++FE+ + AEDAC ++G M G+S ++ +
Sbjct: 14 RERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = -3
Query: 683 KKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
++ D ER YGK+N++ + GFAF++FE+ + AEDAC ++G M G+S ++ +
Sbjct: 14 RERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = -3
Query: 683 KKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
++ D ER YGK+N++ + GFAF++FE+ + AEDAC ++G M G+S ++ +
Sbjct: 14 RERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = -3
Query: 689 EIKKXDXEREFDKYGKLNSVWVALNP-PGFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
++++ + E F KYG++ V + P FAF+EFE+ + AEDA A +G E G +V
Sbjct: 19 DVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRV 78
Query: 512 EIS 504
E +
Sbjct: 79 EFT 81
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = -3
Query: 689 EIKKXDXEREFDKYGKLNSVWVALNP-PGFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
++++ + E F KYG++ V + P FAF+EFE+ + AEDA A +G E G +V
Sbjct: 19 DVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRV 78
Query: 512 EIS 504
E +
Sbjct: 79 EFT 81
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = -3
Query: 689 EIKKXDXEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQXAEDACSAMNGTEMLGA 525
E + D +F +YGK+ ++ + L+ G+A +E+E + A +A N T++LG
Sbjct: 65 EATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQ 124
Query: 524 SXKVE 510
+ KV+
Sbjct: 125 NVKVD 129
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -3
Query: 674 DXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLG 528
D E F YGKL+ V + GF F++F++ + A+DA +NG E+ G
Sbjct: 17 DVEHFFRGYGKLSDV---IMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -3
Query: 686 IKKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLG 528
+ + D E F YG++ V L GF F+EF++ + AEDA +NG E+ G
Sbjct: 14 VSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -3
Query: 686 IKKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLG 528
+ + D E F YG++ V L GF F+EF++ + AEDA +NG E+ G
Sbjct: 14 VSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -3
Query: 686 IKKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLG 528
+ + D E F YG++ V L GF F+EF++ + AEDA +NG E+ G
Sbjct: 14 VSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 35.5 bits (78), Expect = 0.037
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = -3
Query: 659 FDKYGKLNSVWVALN-----PPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEIS 504
F G++N+V + + P GFAFIEF A+ A MNG E G +V ++
Sbjct: 25 FSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 34.3 bits (75), Expect = 0.085
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 614 PPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVE 510
P G+ FIEF ++Q AE A +NG E+ G +V+
Sbjct: 58 PKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = -3
Query: 695 SREIKKXDXEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQXAEDACSAMNGTEML 531
S EI++ R FD +G + S+ ++ +P FAF+E+E + A A +MNG +
Sbjct: 110 SFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLG 169
Query: 530 GASXKV 513
G + KV
Sbjct: 170 GRNLKV 175
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -3
Query: 689 EIKKXDXEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQXAEDACSAMNGTEMLG 528
++ + D + F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 217 DLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGG 275
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = -3
Query: 695 SREIKKXDXEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQXAEDACSAMNGTEML 531
S EI++ R FD +G + S+ ++ +P FAF+E+E + A A +MNG +
Sbjct: 110 SFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLG 169
Query: 530 GASXKV 513
G + KV
Sbjct: 170 GRNLKV 175
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -3
Query: 689 EIKKXDXEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQXAEDACSAMNGTEMLGA 525
++ + D + F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 217 DLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQ 276
Query: 524 SXKV 513
+V
Sbjct: 277 YLRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = -3
Query: 695 SREIKKXDXEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQXAEDACSAMNGTEML 531
S EI++ R FD +G + S+ ++ +P FAF+E+E + A A +MNG +
Sbjct: 110 SFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLG 169
Query: 530 GASXKV 513
G + KV
Sbjct: 170 GRNLKV 175
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -3
Query: 689 EIKKXDXEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQXAEDACSAMNGTEMLGA 525
++ + D + F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 217 DLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQ 276
Query: 524 SXKV 513
+V
Sbjct: 277 YLRV 280
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 605 FAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
F F+ +EN Q A +A SAMNG ++ KV++
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 605 FAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
F F+ +EN Q A +A SAMNG ++ KV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 605 FAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
F F+ +EN Q A +A SAMNG ++ KV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = -3
Query: 695 SREIKKXDXEREFDKYGKLNSVWVALNP------PGFAFIEFENLQXAEDACSAMNGTEM 534
SR + K E F YG + +V + + G+ ++E++NL+ AE + M+G ++
Sbjct: 141 SRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQI 200
Query: 533 LGASXKVEIS 504
G + VE++
Sbjct: 201 DGMAVHVEMT 210
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 605 FAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
F F+ +EN Q A +A SAMNG ++ KV++
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 605 FAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
F F+ +EN Q A +A SAMNG ++ KV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 674 DXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLG 528
+ R FD++G +N V G+AF++FE + A A MN ++ G
Sbjct: 270 EIRRAFDRFGPINEVRT-FKIQGYAFVKFETKESAARAIVQMNNADIGG 317
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -3
Query: 692 REIKKXDXEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQXAEDACSAMNGTEMLG 528
+E+ + + F K G++ +++A + P GFAF+ FE+ A A + +N M
Sbjct: 185 QEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYH 244
Query: 527 ASXKVE 510
KVE
Sbjct: 245 MVLKVE 250
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 614 PPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEIS 504
P GFAF+EF A+ A NG + G + +V ++
Sbjct: 44 PRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 695 SREIKKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLG 528
S++ D F YG + V + +AF+ +E + A A MNG EM G
Sbjct: 245 SQQTTDADLRDLFSTYGDIAEVRI-FKTQRYAFVRYEKKECATKAIMEMNGKEMAG 299
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -3
Query: 674 DXEREFDKYGKLNSVWVALN---PPGFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
D + F+K+G ++ V + N GF F+ E Q AE A ++G+ + G +V
Sbjct: 168 DLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -3
Query: 674 DXEREFDKYGKLNSVWVALN---PPGFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
D + F+K+G ++ V + N GF F+ E Q AE A ++G+ + G +V
Sbjct: 168 DLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 659 FDKYGKLNSVWVALNPP----GFAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
F+ +G++ + + ++ GFA I F N A+ +C +N E+ G ++ I
Sbjct: 147 FESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 201
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 659 FDKYGKLNSVWVALNPP----GFAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
F+ +G++ + + ++ GFA I F N A+ +C +N E+ G ++ I
Sbjct: 292 FESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 346
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -3
Query: 683 KKXDXEREFDKYGKLNSVWVALNP---PGFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
++ D F+K G + V + N GF F+ +N A+ A + NGT + G +V
Sbjct: 112 REPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
Query: 512 EIS 504
++
Sbjct: 172 NLA 174
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -3
Query: 689 EIKKXDXEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQXAEDACSAMNGTEMLGAS 522
E + REF+ YGK+ + + A P G+AFIE+ + A +G ++ G
Sbjct: 114 ETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKR 173
Query: 521 XKVE 510
V+
Sbjct: 174 LVVD 177
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -3
Query: 683 KKXDXEREFDKYGKLNSVWVALNP---PGFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
++ D F+K G + V + N GF F+ +N A+ A + NGT + G +V
Sbjct: 112 REPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
Query: 512 EIS 504
++
Sbjct: 172 NLA 174
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 614 PPGFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
P GFAF+EF A+ A +NG G + +V
Sbjct: 46 PRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRV 79
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -3
Query: 683 KKXDXEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQXAEDACSAMNG 543
K+ D + F KYG+++ V V ++ GFA +EF + A A SA++G
Sbjct: 291 KEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDG 342
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 608 GFAFIEFENLQXAEDACSAMNGTEMLGASXKVEIS 504
GF F+EF+ + A A MN +E+ G + +V +
Sbjct: 53 GFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 608 GFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
GFA++ FEN Q A S +NG + KV
Sbjct: 54 GFAYVTFENEQQMNTAISGLNGADFGNRVLKV 85
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -3
Query: 659 FDKYGKLNSVWVALN----PPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
F K+G++ S V + P GF F+ F + A A +N + + G K+ +
Sbjct: 258 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSV 312
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -3
Query: 659 FDKYGKLNSVWVALN----PPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEI 507
F K+G++ S V + P GF F+ F + A A +N + + G K+ +
Sbjct: 258 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSV 312
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -3
Query: 659 FDKYGKLNSVWVALNP---PGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEIS 504
F+K G + V + N GF F+ +N A+ A + NGT + G +V ++
Sbjct: 2 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 686 IKKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNG 543
I + D F +GK+ +V GF F++F A+++C ++NG
Sbjct: 95 ITRDDIIELFRPFGKIIAVNYFAQQ-GFGFVQFNEAGSADESCRSLNG 141
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 608 GFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
G+AF+ N A +A ++NGT + G + +V
Sbjct: 415 GYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 608 GFAFIEFENLQXAEDACSAMNG 543
GFAFI F + + ++ A AMNG
Sbjct: 143 GFAFINFASFEASDTALEAMNG 164
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 659 FDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMN 546
F+++ L + + N PG AF+EF+ A A + +N
Sbjct: 152 FNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLN 189
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 686 IKKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLG 528
+ + + + F +G++ V + G+AF++F+N A A MN ++ G
Sbjct: 138 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGG 189
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 686 IKKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLG 528
+ + + + F +G++ V + G+AF++F+N A A MN ++ G
Sbjct: 148 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGG 199
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 686 IKKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLG 528
+ + + + F +G++ V + G+AF++F+N A A MN ++ G
Sbjct: 251 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGG 302
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 686 IKKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLG 528
+ + + + F +G++ V + G+AF++F+N A A MN ++ G
Sbjct: 219 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGG 270
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 608 GFAFIEFENLQXAEDACSAMNG 543
GFAFI F + + ++ A AMNG
Sbjct: 153 GFAFINFASFEASDTALEAMNG 174
>Z75548-1|CAA99911.1| 776|Caenorhabditis elegans Hypothetical
protein R90.1 protein.
Length = 776
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 124 LKRVSPSPRELHFLEPSKCLAINPQYSLNFNTWKASDYDNTKPI*PXN*INN 279
+KRV+ P + S L+IN +Y T K S +DNT N NN
Sbjct: 442 IKRVAGLPVDKTRSNKSITLSINNRYKSGAKTNKISSFDNTNAQMDENSANN 493
>Z50109-6|CAA90439.2| 344|Caenorhabditis elegans Hypothetical
protein C09H10.8 protein.
Length = 344
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +1
Query: 112 IPMILKRVSPSPRELHFLEPSKCLAINPQYSLNFNTWKASDYDNTKPI*P 261
I M R S S HFLEP+ AI P +L +T S T+P P
Sbjct: 201 ISMASMRSSRSRSASHFLEPNMSPAIAPMCALLGSTESNSTTTTTQPSSP 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,575,607
Number of Sequences: 27780
Number of extensions: 174716
Number of successful extensions: 402
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -