Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1171
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 94  RLFLKYIPMILKRVSPSPRELHFL 165
           ++FLKY+P IL    P    L ++
Sbjct: 336 KIFLKYLPTILMMRRPKKTRLRWM 359


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 692 REIKKXDXEREFDKYGK 642
           RE K    ERE+ KYGK
Sbjct: 267 REQKSYKNEREYRKYGK 283


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 190 NPQYSLNFNTWKASDYDNTKPI 255
           N  Y+ N+N +  ++Y+N K +
Sbjct: 331 NNNYNNNYNNYNNNNYNNYKKL 352


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 692 REIKKXDXEREFDKYGK 642
           RE K    ERE+ KYG+
Sbjct: 278 REQKSYKNEREYRKYGE 294


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = -1

Query: 70  LVL*WISFFINKN 32
           +++ W+SF++N+N
Sbjct: 235 VIISWVSFWLNRN 247


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = -1

Query: 70  LVL*WISFFINKN 32
           +++ W+SF++N+N
Sbjct: 235 VIISWVSFWLNRN 247


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = -1

Query: 70  LVL*WISFFINKN 32
           +++ W+SF++N+N
Sbjct: 174 VIISWVSFWLNRN 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,904
Number of Sequences: 438
Number of extensions: 2518
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)