Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1170
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    31   0.18 
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   6.6  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.6  

>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 512 HPSPTDAQS-VAPGDSVEVVIAGKLPEDTLRGYLLQARQGDDILGT 378
           HP P D+   V PGD+VE++     P    +G     R+G   +GT
Sbjct: 386 HPDPNDSDKMVMPGDNVEMICTLIHPIVIEKGQRFTVREGGSTVGT 431


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 506 SPTDAQSVAPGDSVEVVIAGKLPEDTL 426
           S T AQ  A G S+ V  AG+ P D +
Sbjct: 571 SSTPAQQSAAGSSINVDTAGRQPSDEI 597


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 168 SRLYSDPXDLQCLDDGGAEHD 230
           S +Y+ P  L+C  DGG+ +D
Sbjct: 224 SDIYNTPWQLRCYYDGGSHYD 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,485
Number of Sequences: 5004
Number of extensions: 34494
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)