Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1170
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820           31   0.98 
11_05_0087 + 18970741-18972702                                         30   2.3  
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385...    30   2.3  
01_06_0388 + 28927211-28928467                                         30   2.3  
02_05_1212 - 34960977-34961097,34961283-34961371,34962165-349622...    29   3.0  
10_01_0159 - 1807806-1809386                                           28   6.9  
01_06_0389 - 28932228-28932365,28932967-28934184                       28   6.9  

>03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820
          Length = 292

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 24/76 (31%), Positives = 32/76 (42%)
 Frame = +1

Query: 385 RMSSPCRACSKYPRKVSSGSLPAITTSTLSPGATLCASVGDGCXAGXRSCAVGRCAAASC 564
           R  SP   C      ++  SLP    +  +  AT  AS G G      S +VG  AAA+ 
Sbjct: 39  RRPSPSSQCPPLEPSLTL-SLPDDAAAGAAATATATASGGGGPAHSVSSLSVGAAAAAAV 97

Query: 565 RGXRSXGPPXERASDT 612
           +  R+     ER S T
Sbjct: 98  KRERAEEADGERVSST 113


>11_05_0087 + 18970741-18972702
          Length = 653

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 25/83 (30%), Positives = 30/83 (36%)
 Frame = +1

Query: 442 SLPAITTSTLSPGATLCASVGDGCXAGXRSCAVGRCAAASCRGXRSXGPPXERASDTRDV 621
           S PA+ T  L     L  +  DGC A  R  A      A CRG  S     + ASD    
Sbjct: 312 SAPALATVHLE-SVFLAGTKEDGCCARLRFPAATALVLAKCRGHGSHHNGDDDASDCEGA 370

Query: 622 ITNITTXXHKHAYTXMMLPSSLI 690
           +           YT +    SLI
Sbjct: 371 MEIDAPRLRSFKYTGLPRRFSLI 393


>10_08_0614 -
           19238064-19238132,19238381-19238407,19238436-19238510,
           19238637-19239317,19239423-19239554,19239676-19239723,
           19239828-19239878,19240015-19240134,19241121-19241261,
           19241701-19241865,19241981-19242160,19242314-19242445,
           19242536-19242643,19242779-19242883,19243217-19243321,
           19243407-19243463,19243991-19244010,19244299-19244377,
           19245021-19245080,19245562-19245615,19246535-19246600,
           19246938-19246990,19247361-19247450,19248152-19248249,
           19248348-19248721
          Length = 1029

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
 Frame = +1

Query: 361 PSSSXKVPRMSSPCRACSKYPRKVSSGSLPAITTSTLSPGATLCASV----------GDG 510
           PSSS    R SSP  A S+ P   SS S  +  T  L P +   AS           G G
Sbjct: 5   PSSSASSRRSSSPFSAGSRRPPTSSSSSAGSYLTGRLMPRSYSTASSVSSSSHFFGGGGG 64

Query: 511 CXAGXRSCAVGRCAAAS 561
              G RS   GR  ++S
Sbjct: 65  SGGGSRSTTPGRRGSSS 81


>01_06_0388 + 28927211-28928467
          Length = 418

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -2

Query: 482 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTXSLEDGDVFXQLINCGKPGNA 315
           APG S+  V+A   G+L E  +R Y     +G   L   SL  GDV  + +  G  G A
Sbjct: 86  APGGSLADVVARSGGRLDECAIRAYAADVARGLAYLHGMSLVHGDVKGRNVVVGADGRA 144


>02_05_1212 -
           34960977-34961097,34961283-34961371,34962165-34962239,
           34962330-34962488
          Length = 147

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 517 AGXRSCAVGRCAAASCRGXRSXGPPXERASDTRDVITNITTXXH 648
           AG  + A GRC  AS  G R   PP   ++D R  +  +    H
Sbjct: 22  AGLGAYADGRCVRASITGHRRLVPPPPGSTDQRSTVEVVGHKAH 65


>10_01_0159 - 1807806-1809386
          Length = 526

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 482 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTXSLEDGDVFXQLINCGKPGNA 315
           APG S+  V+A   G+L E  +R Y     +G D L    +  GDV    +  G  G A
Sbjct: 92  APGGSLADVVARNGGRLDEGAVRTYAADVLRGLDYLHGKLVVHGDVKGSNVLVGADGRA 150


>01_06_0389 - 28932228-28932365,28932967-28934184
          Length = 451

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -2

Query: 482 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTXSLEDGDVFXQLINCGKPGNA 315
           APG S+    A   G LPE  +R Y     +G   L   SL  GDV  + +  G  G A
Sbjct: 82  APGGSLADEAARNGGCLPEPAIRAYAADVARGLAYLHGNSLVHGDVKARNVVIGSDGRA 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,789,682
Number of Sequences: 37544
Number of extensions: 300830
Number of successful extensions: 1097
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)