Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1170
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens ...    58   3e-08

>AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16275 fis, clone NT2RI2027157, moderately
           similar to Mouse SDR2 mRNA. ).
          Length = 626

 Score = 58.0 bits (134), Expect = 3e-08
 Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
 Frame = -2

Query: 479 PGDSVEVVIAGKLPEDTLRGYLLQARQGDDI----LGTXSLEDGDVFXQLINCGK-PGNA 315
           PGD +EV ++G       +G+LL+AR  +D+    +G+ +L D +V  QL+ C    G+A
Sbjct: 60  PGDQIEVTLSGH----PFKGFLLEARNAEDLNGPPIGSFTLIDSEV-SQLLTCEDIQGSA 114

Query: 314 VTHKKHDNKEDKRQVRVRWSPPQGLTGEVVFRATIVKTLKVXWVGV 177
           V+H+   +   K +++V W+ P        F  T+V+  K+ WV +
Sbjct: 115 VSHR---SASKKTEIKVYWNAPSSAPNHTQFLVTVVEKYKIYWVKI 157


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,940,918
Number of Sequences: 237096
Number of extensions: 1584801
Number of successful extensions: 5169
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5160
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)