Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1170
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    39   0.003
U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase...    28   8.1  
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase...    28   8.1  
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de...    28   8.1  
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de...    28   8.1  

>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
 Frame = -2

Query: 494 AQSVAPGDSVEVVIAG---KLPEDTLRGYLLQARQGDDI-LGTXSLEDGDVFXQLINCGK 327
           ++   PG+  +V I G   +    T RG+++ +   D+   G+  +  G    ++     
Sbjct: 60  SKGFVPGEIYKVSIRGWRTQYTVKTFRGFVVSSLFEDNTSAGSWQVVKGHGDARI----S 115

Query: 326 PGNAVTHKKHDNKEDKRQVRVRWSPPQGLTGEVVFRATIVKTLKVXWVGVQSAPIKIVS* 147
           PG   +   H N + K  V + W  P+  +G VVFRA++++T  + +   +   +K+   
Sbjct: 116 PGCRQSGVSHANLKSKTSVHMMWKAPEVSSGCVVFRASVIETKYIWFTEAEGLTVKLCIQ 175

Query: 146 AATSI 132
             T I
Sbjct: 176 KGTQI 180


>U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical
           protein C01B10.6b protein.
          Length = 503

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = +1

Query: 358 SPSSSXKVPRMS-SPCRACSKYPRKVSSGSLPAITTSTLSPGATL-CASVGDGCXAGXRS 531
           SP+    VP ++ +P   C   P  V+  + PA+ TST++P A +  A+   G      S
Sbjct: 404 SPTDPTPVPPVAPTPPSVC---PTTVAPTTTPALLTSTIAPTADVTSATNAAGSTGATGS 460

Query: 532 CAVGRCAAASCRGXRSXGPPXERASDTRDVITNITT 639
            A G    +      + G     A+DT    T+ +T
Sbjct: 461 SATGSTVTSDVASSSATGGSSTNATDTTQSSTDAST 496


>U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical
           protein C01B10.6a protein.
          Length = 506

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = +1

Query: 358 SPSSSXKVPRMS-SPCRACSKYPRKVSSGSLPAITTSTLSPGATL-CASVGDGCXAGXRS 531
           SP+    VP ++ +P   C   P  V+  + PA+ TST++P A +  A+   G      S
Sbjct: 407 SPTDPTPVPPVAPTPPSVC---PTTVAPTTTPALLTSTIAPTADVTSATNAAGSTGATGS 463

Query: 532 CAVGRCAAASCRGXRSXGPPXERASDTRDVITNITT 639
            A G    +      + G     A+DT    T+ +T
Sbjct: 464 SATGSTVTSDVASSSATGGSSTNATDTTQSSTDAST 499


>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
            beta protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 484  TLCASVGDGCXAGXRSCAVGRCA--AASCRGXRSXGP 588
            +L ASV  GC +   +  V  C+   ASC G  + GP
Sbjct: 1189 SLTASVSSGCGSASGTVTVSVCSPSGASCSGYSTGGP 1225


>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
            beta homolog EGL-8 protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 484  TLCASVGDGCXAGXRSCAVGRCA--AASCRGXRSXGP 588
            +L ASV  GC +   +  V  C+   ASC G  + GP
Sbjct: 1202 SLTASVSSGCGSASGTVTVSVCSPSGASCSGYSTGGP 1238


>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
            defective protein 8,isoform a protein.
          Length = 1419

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 484  TLCASVGDGCXAGXRSCAVGRCA--AASCRGXRSXGP 588
            +L ASV  GC +   +  V  C+   ASC G  + GP
Sbjct: 1190 SLTASVSSGCGSASGTVTVSVCSPSGASCSGYSTGGP 1226


>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
            defective protein 8,isoform b protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 484  TLCASVGDGCXAGXRSCAVGRCA--AASCRGXRSXGP 588
            +L ASV  GC +   +  V  C+   ASC G  + GP
Sbjct: 1202 SLTASVSSGCGSASGTVTVSVCSPSGASCSGYSTGGP 1238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,459,314
Number of Sequences: 27780
Number of extensions: 226266
Number of successful extensions: 791
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)