Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1169
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    59   5e-11
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.3  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 58.8 bits (136), Expect = 5e-11
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
 Frame = -1

Query: 531 MSLTAEYEADGKLLILQIKGKGDALINCVNVDVEIESKLNQVK-DNNGKDHLKLGTPSYK 355
           +   A+Y+ +GK+L+L ++G G +  N    D++  + +   K + NG+ +L++   + K
Sbjct: 125 VDFVADYKIEGKVLLLPVRGAGKS--NITMYDLKSHNDIYCEKYEKNGETYLRIKKHAVK 182

Query: 354 YKIEKTTFDLKNLFNGNKELADTTLQFANENWQQLMDDLAPPAIKQIVKTVVKAINKFFA 175
           +   K     +NLF+GNKEL +   +F NEN + L  +L     +       K  N+ F 
Sbjct: 183 FNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEIFN 242

Query: 174 SVTTQQI 154
            V   +I
Sbjct: 243 RVPFDKI 249


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 191 IALTTVLTICLIAGGARSSM 250
           + +TTVLT+  I+ G RSS+
Sbjct: 276 LGITTVLTMTTISTGVRSSL 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,135
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)