Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1168
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   2.1  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    25   4.8  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    25   8.4  

>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 144 LQKLFSDLLLNDNQVFFNK 88
           LQKLF+DL ++D  +F N+
Sbjct: 226 LQKLFADLTVSDQMLFLNQ 244


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 210 VW*HRSTVGISRIPGWRLVLPFLQKLFSDL--LLNDNQVFFN 91
           VW H +   ++ IP  +LV P+++K    L  L  D+  +F+
Sbjct: 184 VWRHDNEESLANIPVTQLVNPYIEKAIQYLRPLAQDSTEYFD 225


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 434 PYTAYGAYGVAPYGLRRPRLGKPITTAS 351
           PY A G YG   + L    +GKP+ +A+
Sbjct: 200 PYIATGEYGDFMHTLDTRNIGKPLFSAN 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,725
Number of Sequences: 5004
Number of extensions: 34023
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)