Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1168
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    33   0.097
04_04_0243 - 23858975-23860706,23861178-23861230,23861338-238615...    29   2.8  
03_06_0062 + 31384440-31384619,31384788-31384957,31385143-31385992     27   8.5  
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345     27   8.5  
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178...    27   8.5  

>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
            27931337-27931501,27931671-27931745,27931829-27931983,
            27932234-27932369,27932454-27932523,27932602-27932729,
            27932838-27932894,27933326-27933511,27934031-27934123,
            27934488-27934573,27934668-27934734,27934873-27934939,
            27935016-27935152,27935618-27935709,27935849-27935915,
            27936058-27936078
          Length = 1006

 Score = 33.5 bits (73), Expect = 0.097
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -3

Query: 300  SRYY*ITLHDRPCQLLNALVIDNVVPGVGRV-W*HRSTVGISR-IPGWRLVLPFLQKLFS 127
            SR Y +  H     L NA+  DN V  +G++   HR  +  S+ +P W   LP    L  
Sbjct: 905  SRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVVPAWLSCLPIKNDLIE 964

Query: 126  DLLLND 109
              ++++
Sbjct: 965  AKIVHE 970


>04_04_0243 -
           23858975-23860706,23861178-23861230,23861338-23861538,
           23861649-23861990,23862277-23862423,23862945-23863086,
           23863876-23863959,23864772-23864779
          Length = 902

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = -1

Query: 470 PMALPHLTGIAAPYTAYGAYGVAPYGLRRPRLGKPITTASRYFXISAMQK*HAFFLIADI 291
           P +LP+L   A+      A  +  Y  R   L  PI+TAS +  +SA+    AF L AD+
Sbjct: 421 PSSLPNLLLTASAAVRPHATSLRLYS-RMKSLSLPISTASLHPLLSALPSAPAFALFADM 479

Query: 290 IE*R 279
              R
Sbjct: 480 FRLR 483


>03_06_0062 + 31384440-31384619,31384788-31384957,31385143-31385992
          Length = 399

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 473 PPMALPHLTGIAAPYTAYGAYGVAPYGLRRPRL 375
           P + +P +  + AP+  Y  YGV   G   PRL
Sbjct: 288 PWLKIPSIPNLFAPFGLYFLYGVGGAGPASPRL 320


>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
          Length = 304

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 182 IPTVDRCYQTRPTPGTT 232
           +P  DRC  T P PGTT
Sbjct: 32  LPDCDRCSGTAPVPGTT 48


>01_06_1488 +
           37716986-37717076,37717424-37717558,37717755-37717831,
           37717934-37718181,37718503-37718559,37718665-37718800,
           37718944-37719001,37719110-37719195,37719270-37719326,
           37719537-37719557,37720553-37720954,37721500-37721647,
           37721940-37722036,37724065-37724202,37724496-37724598,
           37724792-37724828,37724905-37725014,37725141-37725164
          Length = 674

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 286 NNVARSALSTIKCFSN*QRRAGRRSGLVTSVNGRYFPDPRLALSV 152
           N +  S    +K F   +RRAG  S    ++ G    DPR  L+V
Sbjct: 361 NTIEPSTQKALKKFGEKERRAGDESSRTLAMAGEAGGDPRAWLAV 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,197,128
Number of Sequences: 37544
Number of extensions: 229625
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)