Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1166
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    31   0.18 
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   8.8  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   8.8  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 4   FFFFFVCNDLIKHLSELKIGDNHKEYGRDTFKKKKNIPHRSSWFKI 141
           FF FFV ND + HL  L I D   E  R T   + ++PH   +  +
Sbjct: 328 FFIFFVGNDFLPHLPSLDIRDGAVE--RLTEIWRASLPHMGGYLTL 371


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 16  FVCNDLIKHLSELKIGDNHKEYGRDTFKKKKNIPHRSS 129
           F  ND  K L++++     KE G      K ++PHRSS
Sbjct: 236 FSGNDSHKSLTDIR----DKENGETEVSAKNHVPHRSS 269


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 469 TW*FIKKIFIYLLGSIVFFFFISAKKS 389
           TW     + I +L +++FF+F S+ KS
Sbjct: 26  TWIKHGILLILVLSTVIFFYFFSSHKS 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,541
Number of Sequences: 5004
Number of extensions: 40262
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)