Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1166
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF016657-7|AAB93660.1|  164|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical
           protein Y71G12A.2 protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 163 FNIIYKTFSYTQSSTSKC 216
           +NI YK F+Y +SS SKC
Sbjct: 514 WNITYKLFNYLRSSNSKC 531


>AF016657-7|AAB93660.1|  164|Caenorhabditis elegans Hypothetical
           protein C16C4.16 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
 Frame = +1

Query: 16  FVCNDLIKHLSELKIGDNHKEYGRDTFKKKKNIP-----HRSSWF 135
           F+ N  +KH+S +K GD++  Y +   +K+ NIP     HRS+ F
Sbjct: 17  FLLNHTVKHISSIKEGDDY--YTK--IEKRYNIPWKLGIHRSNGF 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,108,780
Number of Sequences: 27780
Number of extensions: 224640
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)