Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1165
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    32   0.098
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   4.9  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   6.4  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   8.5  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 31.9 bits (69), Expect = 0.098
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 551 YMCWKIYYTDNVMVILYIYTKXRIEKNVKYSFSDXNCNTGYSVGFMCNAT 700
           + CW  YY   + V+ Y  T       + Y++S  +C TG+ +G +   T
Sbjct: 382 FYCWDNYYYSFLQVVHY--TSITAAGYISYTYSFTSCATGFFLGILIRLT 429


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 11   FFLPWXIIYNNYSFNQYIDKVLQNNFFIIFNCPPCL 118
            F L W  IYNN+  N   D      F +IF+  P +
Sbjct: 1082 FTLFWYQIYNNFDANYLFDYTYVMLFNLIFSSLPVI 1117


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 645 NEYFTFFSILHLVY 604
           NEY TF SILHL Y
Sbjct: 316 NEYLTFQSILHLSY 329


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 256 NVKFPRRFLSGHGINFQIGY*NFCNPIKK 170
           N K PR   +G  +N  IG+ N  NP  K
Sbjct: 372 NAKNPRVLQAGMTLNLSIGFGNLINPHPK 400


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 171 NI*ISLKREKKNFLKSFLKQGGQLKIIKKLFCKTLS 64
           N    +K   KNFLK   +    ++IIK L C  L+
Sbjct: 452 NFEFMVKEHIKNFLKLLKEHNNPVRIIKLLDCLVLT 487


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 563 KIYYTDNVMVILYIYTKXRIEKNVKYSFSDXNCNT 667
           KIY++ N M ++ +     +  N KY     NC T
Sbjct: 344 KIYHSKNSMGLMDLDALKTVASNSKYRTKPKNCKT 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,652
Number of Sequences: 5004
Number of extensions: 45121
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)