Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1165
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 39 0.003
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 37 0.017
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 37 0.017
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 33 0.28
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 31 0.85
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 31 0.85
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 31 0.85
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 30 2.0
U41276-3|AAA82470.2| 517|Caenorhabditis elegans Hypothetical pr... 30 2.0
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 30 2.0
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 30 2.0
U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated p... 29 2.6
M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein. 29 2.6
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 29 4.5
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL032630-10|CAA21566.1| 396|Caenorhabditis elegans Hypothetical... 29 4.5
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 28 6.0
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 28 6.0
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 635 KYSFSDX-NCNTGYSVGFMCNATGQCECLPGVIGKK 739
K SF D CN S G C+ TGQC+C PGV G K
Sbjct: 664 KTSFPDSCQCNRVGSFGHTCDETGQCKCRPGVAGIK 699
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 659 CNTGYSVGFMCNATGQCECLPGVIGKK 739
CN S G C+ TGQC+C PGV G K
Sbjct: 740 CNRVGSFGHTCDETGQCKCRPGVAGIK 766
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 647 SDXNCNTGYSVGFMCNATG-QCECLPGVIGKK 739
S+ NC+ SV +CN G QCEC P V+G++
Sbjct: 795 SECNCDATGSVSGICNVQGGQCECKPNVVGRR 826
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 650 DXNCNTGYSVGFMCNA-TGQCECLPGVIGKK 739
+ NC+ S G C+ TGQC+C PGV G++
Sbjct: 930 ECNCDPLGSEGNTCDVNTGQCQCKPGVTGQR 960
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 659 CNTGYSVGFMCNATGQCECLPGVIGK 736
CN S+ C+ G+C+C PGV G+
Sbjct: 390 CNEIGSLSTQCDNEGKCQCKPGVTGR 415
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 662 NTGYSVGFMCNAT-GQCECLPGVIG 733
N Y++ CN GQC+CLP VIG
Sbjct: 886 NNDYTL-LECNQQDGQCDCLPNVIG 909
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 650 DXNCNTGYSVGFMCN-ATGQCECLPGVIGKK 739
D C+ S CN TGQC C PGV G K
Sbjct: 1085 DCGCDPTGSEDVSCNLVTGQCVCKPGVTGLK 1115
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 647 SDXNCNTGYSVGFMCNA-TGQCECLPGVIGK 736
S +C+ S+ CN +GQCEC PGV G+
Sbjct: 1645 SPCDCHPDGSLHGACNPLSGQCECKPGVTGR 1675
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCN-ATGQCECLPGVIGKK 739
+CN S+G C+ +GQC C GV GK+
Sbjct: 989 DCNDTGSIGSDCDQVSGQCNCKQGVFGKQ 1017
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCNA-TGQCECLPGVIGKK 739
+C+ S G MCN TGQC+C +G K
Sbjct: 1182 DCSDIGSDGGMCNTFTGQCKCKAAYVGLK 1210
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 650 DXNCNTGYSVGFMCN-ATGQCECLPGVIGKK 739
D C+ S CN TGQC C PGV G K
Sbjct: 1085 DCGCDPTGSEDVSCNLVTGQCVCKPGVTGLK 1115
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 647 SDXNCNTGYSVGFMCNA-TGQCECLPGVIGK 736
S +C+ S+ CN +GQCEC PGV G+
Sbjct: 1645 SPCDCHPDGSLHGACNPLSGQCECKPGVTGR 1675
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCN-ATGQCECLPGVIGKK 739
+CN S+G C+ +GQC C GV GK+
Sbjct: 989 DCNDTGSIGSDCDQVSGQCNCKQGVFGKQ 1017
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCNA-TGQCECLPGVIGKK 739
+C+ S G MCN TGQC+C +G K
Sbjct: 1182 DCSDIGSDGGMCNTFTGQCKCKAAYVGLK 1210
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 650 DXNCNTGYSVGFMCN-ATGQCECLPGVIGKK 739
D C+ S CN TGQC C PGV G K
Sbjct: 1085 DCGCDPTGSEDVSCNLVTGQCVCKPGVTGLK 1115
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 647 SDXNCNTGYSVGFMCNA-TGQCECLPGVIGK 736
S +C+ S+ CN +GQCEC PGV G+
Sbjct: 1645 SPCDCHPDGSLHGACNPLSGQCECKPGVTGR 1675
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCN-ATGQCECLPGVIGKK 739
+CN S+G C+ +GQC C GV GK+
Sbjct: 989 DCNDTGSIGSDCDQVSGQCNCKQGVFGKQ 1017
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCNA-TGQCECLPGVIGKK 739
+C+ S G MCN TGQC+C +G K
Sbjct: 1182 DCSDIGSDGGMCNTFTGQCKCKAAYVGLK 1210
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATG-QCECLPGVIGKK 739
+C S F C G QC+C PGVIG++
Sbjct: 1416 DCVAQGSESFQCEQYGGQCKCKPGVIGRR 1444
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATGQCECLPGVIGK 736
+C+ G TG+CECLP +G+
Sbjct: 428 DCDPDKHTGACAEETGKCECLPRFVGE 454
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCNA-TGQCECLPGVIGKK 739
+C S+G +C+ TGQC C G G +
Sbjct: 2085 DCEADLSMGTVCDVRTGQCHCQEGATGSR 2113
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATG-QCECLPGVIGKK 739
+C S F C G QC+C PGVIG++
Sbjct: 1416 DCVAQGSESFQCEQYGGQCKCKPGVIGRR 1444
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATGQCECLPGVIGK 736
+C+ G TG+CECLP +G+
Sbjct: 428 DCDPDKHTGACAEETGKCECLPRFVGE 454
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCNA-TGQCECLPGVIGKK 739
+C S+G +C+ TGQC C G G +
Sbjct: 2085 DCEADLSMGTVCDVRTGQCHCQEGATGSR 2113
>U41276-3|AAA82470.2| 517|Caenorhabditis elegans Hypothetical
protein C52B11.3 protein.
Length = 517
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 543 CLLLIIRMYFSYDTALPLYIYVIMYIFIYLSIYIDVYYRSM-FRL*IKLASV 391
CL +MY S+ + + YI + + +F Y +YI S R+ IK S+
Sbjct: 196 CLFTDSKMYVSFSSLVSFYIPLFLILFAYGKVYIIATRHSKGMRMGIKTVSI 247
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATG-QCECLPGVIGKK 739
+C S F C G QC+C PGVIG++
Sbjct: 1416 DCVAQGSESFQCEQYGGQCKCKPGVIGRR 1444
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATGQCECLPGVIGK 736
+C+ G TG+CECLP +G+
Sbjct: 428 DCDPDKHTGACAEETGKCECLPRFVGE 454
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCNA-TGQCECLPGVIGKK 739
+C S+G +C+ TGQC C G G +
Sbjct: 2085 DCEADLSMGTVCDVRTGQCHCQEGATGSR 2113
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATG-QCECLPGVIGKK 739
+C S F C G QC+C PGVIG++
Sbjct: 1416 DCVAQGSESFQCEQYGGQCKCKPGVIGRR 1444
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATGQCECLPGVIGK 736
+C+ G TG+CECLP +G+
Sbjct: 428 DCDPDKHTGACAEETGKCECLPRFVGE 454
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 656 NCNTGYSVGFMCNA-TGQCECLPGVIGKK 739
+C S+G +C+ TGQC C G G +
Sbjct: 2085 DCEADLSMGTVCDVRTGQCHCQEGATGSR 2113
>U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated
protein 6 protein.
Length = 612
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 659 CNTGYSVGFMCN-ATGQCECLPGVIG 733
C+ S+G CN ++GQC C PGV G
Sbjct: 412 CHPVGSLGKSCNQSSGQCVCKPGVTG 437
>M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein.
Length = 612
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 659 CNTGYSVGFMCN-ATGQCECLPGVIG 733
C+ S+G CN ++GQC C PGV G
Sbjct: 412 CHPVGSLGKSCNQSSGQCVCKPGVTG 437
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 620 IEKNVKYSFSDXNCNTGYSVGFMCNATGQCECLPGV 727
++KN+ S + G MC A+G+C C G+
Sbjct: 769 VKKNIGIEGSPCSSRDDCGEGLMCGASGKCSCPEGL 804
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
protein F48E3.8b protein.
Length = 1299
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 620 IEKNVKYSFSDXNCNTGYSVGFMCNATGQCECLPGV 727
++KN+ S + G MC A+G+C C G+
Sbjct: 769 VKKNIGIEGSPCSSRDDCGEGLMCGASGKCSCPEGL 804
>AL032630-10|CAA21566.1| 396|Caenorhabditis elegans Hypothetical
protein Y62H9A.10 protein.
Length = 396
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 549 YSCLLLIIRMYFSYDTALPLYIYVIMYIFIYL 454
+S +L R Y +Y L ++I +I+Y FIY+
Sbjct: 176 FSSVLPWFRNYLAYQRMLCVFIPIIIYFFIYI 207
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATGQCECLPGVIG 733
NC G G TGQC CLPG G
Sbjct: 1387 NCENG---GTCDRLTGQCRCLPGFTG 1409
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATGQCECLPGVIGK 736
NC G S TG+CECLPG G+
Sbjct: 1172 NCKNGASCD---RKTGRCECLPGWSGE 1195
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATGQCECLPGVIG 733
NC G G TGQC CLPG G
Sbjct: 1387 NCENG---GTCDRLTGQCRCLPGFTG 1409
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 656 NCNTGYSVGFMCNATGQCECLPGVIGK 736
NC G S TG+CECLPG G+
Sbjct: 1172 NCKNGASCD---RKTGRCECLPGWSGE 1195
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 629 NVKYSFSDXNC-NTGYSVGFMCNATGQCECLPGVIGKK 739
N +S SD NC N G + + NAT C CLPG G +
Sbjct: 1960 NQIHSCSDINCFNGGTCIDY--NAT--CACLPGTTGDR 1993
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,078,177
Number of Sequences: 27780
Number of extensions: 247093
Number of successful extensions: 731
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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