Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1165
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    26   0.42 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   0.42 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   FFFLPWXIIYNNYSFNQYIDKVLQNNFFIIFNCP 109
           F +  W  +YN Y + + +  V+ + FFI   CP
Sbjct: 429 FQYTDWEEVYNGYIYQKMVADVVGDYFFI---CP 459


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   FFFLPWXIIYNNYSFNQYIDKVLQNNFFIIFNCP 109
           F +  W  +YN Y + + +  V+ + FFI   CP
Sbjct: 429 FQYTDWEEVYNGYIYQKMVADVVGDYFFI---CP 459


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 509 YEKYMRIISNKHEYYMCWKIYYTDNVMVILYIYTKXRIEKNVKY 640
           Y  Y RII   H Y M  K Y  D ++          ++K + Y
Sbjct: 419 YRIYKRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITY 462


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 509 YEKYMRIISNKHEYYMCWKIYYTDNVMVILYIYTKXRIEKNVKY 640
           Y  Y RII   H Y M  K Y  D ++          ++K + Y
Sbjct: 419 YRIYKRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITY 462


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 35  YNNYSFNQYIDKVLQNNFFI 94
           YNN ++N Y  K+   N+ I
Sbjct: 333 YNNNNYNNYNKKLYYKNYII 352


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 584 VMVILYIYTKXRIEKNVKYSFSDXNCNTGYSVGFMCNA 697
           ++VI+Y YT   +E   +   S+ +     S+GF+  A
Sbjct: 217 LVVIIYTYTSILLEIRRRSKKSEDDKIRRSSIGFLTRA 254


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 32  IYNNYSFNQYIDKVLQNNFFIIFNCP 109
           I+NN ++N Y +K L  N   I   P
Sbjct: 312 IHNNNNYNNYNNKKLYYNINYIEQIP 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,553
Number of Sequences: 438
Number of extensions: 3321
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)