Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1164
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0005 + 27536091-27536761,27539697-27539890,27540097-275402...    31   0.75 
07_03_0960 - 22902279-22902530,22902604-22902726,22902855-229029...    28   7.0  
08_02_1632 + 28386956-28387042,28387120-28387185,28387354-283874...    28   9.3  

>11_08_0005 +
           27536091-27536761,27539697-27539890,27540097-27540255,
           27540385-27541493
          Length = 710

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 689 FPKPRAAI*DSSHICX*KSEENGTCVFTXLKRTCLDVTNVTGRSEELW 546
           F  PR  I D +       E   T V+T + + C D++N +  S+ +W
Sbjct: 71  FAPPRPYIADDNEFIDVSLETGETRVYTPVLQNCFDLSNTSSSSDAIW 118


>07_03_0960 - 22902279-22902530,22902604-22902726,22902855-22902941,
            22903017-22903068,22903197-22903321,22903476-22903684,
            22903990-22904191,22906205-22906309,22907264-22907325,
            22907625-22907814,22907887-22907982,22908069-22908171,
            22909117-22909220,22910239-22910325,22911238-22911323,
            22911410-22911502,22912586-22912673,22912786-22912898,
            22912989-22913111,22914473-22914524,22915185-22915286,
            22915539-22915582,22915667-22915740,22915825-22915916,
            22916566-22916633,22918572-22918647,22918767-22918952
          Length = 997

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
 Frame = +2

Query: 341  SYYGTSSYLVILKPNLQHVHRTPYNYNNQETRCVAVVDQNKPINVI*NVNRSLRXQTIA* 520
            SY+  +     +K  +QHV      +N   + C A+         I  + R LR    A 
Sbjct: 712  SYFAGNMEPGAVKGVMQHVE--DILFNAPVSLCKALPSSQHLTKRIVKLERGLRYYYPAL 769

Query: 521  TRDIPDNITRVLHFSQLHS*HLNKCVLXX*IH-TFRSPRFFXNKCATNLISLPLVLEKXR 697
              +  D  + +LH+ Q+H   L K V+   +    + P F   +    L  + L+ +K  
Sbjct: 770  CLNHQDENSCLLHYIQIHQDDLKKNVILQLLALVAKQPAFHQLRSVEQLGYITLLRQKND 829

Query: 698  EGVR 709
             GVR
Sbjct: 830  SGVR 833


>08_02_1632 +
           28386956-28387042,28387120-28387185,28387354-28387449,
           28387534-28387609,28387884-28387972,28388041-28388133,
           28390389-28390526,28390709-28390814,28391521-28391627
          Length = 285

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 758 FSPPAIXVFTSRVKLEVLLLP*XFPKPRA 672
           F+PP      S  KL+ LLLP  F +PRA
Sbjct: 70  FAPPPSLPAQSSSKLDKLLLPNPFDRPRA 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,355,278
Number of Sequences: 37544
Number of extensions: 286126
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)