Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1163
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    29   0.71 
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    29   0.94 
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    27   2.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   3.8  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    27   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.8  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   3.8  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   5.0  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    26   5.0  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      26   6.6  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    26   6.6  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   8.7  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   8.7  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    25   8.7  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 661 KCTSNGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPRCSHT 524
           KC         GV ++A + +   R+ +G  +G VK+W+   C HT
Sbjct: 465 KCVHTLFGHIEGVWEIAADHL---RLISGAHDGVVKVWEACECVHT 507


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 84  IKQKTIIYLNYINKKTIKLYSK*TYVPYSNKKLLKNSYFLHRL 212
           +K+   I L+Y NK    L  K  +  YS+K+ LK S F+H+L
Sbjct: 344 LKEIAYIMLHYHNKP---LEHKAFFQKYSSKRFLKASIFVHQL 383


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 595 GCRVAAGDSEGCVKIWDL--PRCSH 527
           G +V  G  +G +KIWDL    CSH
Sbjct: 189 GTQVFIGGIDGAIKIWDLRNNHCSH 213


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 534 QRGRSQIFTQPSESPAATLQPPI*FTASLQTPPVPLSPF 650
           +R     +   S  P A    PI  T++  T P+P  PF
Sbjct: 583 ERSSHSSYHNSSHVPTAAFNSPIMRTSTKSTSPIPARPF 621


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 595 GCRVAAGDSEGCVKIWD 545
           G  VA+GD++G V+IWD
Sbjct: 70  GYYVASGDNQGNVRIWD 86


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 587 PATPDLIHGQLTNATRSFEPIRRALPSR 670
           P TP          ++SFEPI R LPSR
Sbjct: 683 PITPPRTWHSPDFTSKSFEPIERKLPSR 710


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 546 SQIFTQPSESPAATLQPPI*FTASLQTPPVPLSPFDVHFPPGSN 677
           ++I +  SES + +L   + F  S   P   LS  D+HF    N
Sbjct: 631 TEIISSDSESLSQSLNMAVDFRQSSSLPADKLSSLDIHFEDDYN 674


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 519 PRVCEQRGRSQIFTQPSESPAATLQPPI*F--TASLQTPPVPLSPFDVHFPPGSNVTQAH 692
           PR   QR  S   T  S  PA T  PPI    T S   PPV         P  SN+    
Sbjct: 349 PRAPLQRTPSGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSVSNILSNQ 408

Query: 693 L 695
           L
Sbjct: 409 L 409


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 583 AAGDSEGCVKIWD 545
           A GD  GCV +WD
Sbjct: 121 ATGDDNGCVSVWD 133


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 698 PXMRLCDVASGREVHVEWAQRNGWR 624
           P  R+  + S  EVH+E  QR+G R
Sbjct: 521 PPTRIFTINSAGEVHIELLQRSGHR 545


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 130 PSNYIL-NKHMYPIRIKNSLKTPISYTDYLCPSIDRRLLGKTN 255
           PS  IL NKH Y +R   +    ++Y  YLC  +   +  K N
Sbjct: 275 PSKLILKNKHHYILRSLITHSGSVTYGHYLCYRLQDDIWWKAN 317


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 286 FLNRYLVLIFGLFFLINAYLWMDI 215
           F  RY+VL+ GLF +   +++ D+
Sbjct: 448 FYGRYIVLLMGLFSMYVGFVYNDL 471


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +3

Query: 558 TQPSESPAATLQPPI*FTASLQTPPVPLSPFDVHFPPGSNVT 683
           TQP      T+QPP  F    Q P VP  P      P +NVT
Sbjct: 348 TQPVNPNGFTVQPPATFMQQPQGPFVP--PNTTFESPFANVT 387


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 120 NKKTIKLYSK*TYVPYSNKKLLKNSY 197
           N  T+KLYS    +P S K+L+K+ Y
Sbjct: 319 NFGTLKLYSNIESLPASLKQLIKDEY 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,133
Number of Sequences: 5004
Number of extensions: 47730
Number of successful extensions: 158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)