Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1163
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981... 32 0.56
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 31 0.98
01_01_0925 - 7306881-7308486,7308797-7308906 31 0.98
08_02_0248 - 14757365-14757426,14758550-14758991 30 2.3
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 30 2.3
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306... 29 3.0
02_02_0706 + 13126176-13126644,13128666-13128867,13129424-131295... 29 3.0
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896... 29 5.2
01_01_0646 + 4904790-4904996,4905437-4905483,4905623-4905662,490... 28 6.9
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 28 9.1
>07_03_1570 +
27797315-27797409,27797519-27797551,27798135-27798199,
27798406-27798493,27798579-27798651,27798975-27799081,
27799595-27799637,27799760-27799816,27799905-27799981,
27800221-27800266,27800364-27800410,27800498-27800571,
27800656-27800711,27800885-27801011,27801133-27801206
Length = 353
Score = 31.9 bits (69), Expect = 0.56
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -3
Query: 586 VAAGDSEGCVKIWD 545
VA+GD EGC+K+WD
Sbjct: 108 VASGDDEGCIKVWD 121
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 31.1 bits (67), Expect = 0.98
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 564 PSESPAATLQPPI*FTASLQTPPVPLSPFDVHFPPGSNVTQAH 692
P+ +P T PP +S PP PL P PP TQ+H
Sbjct: 78 PALAPTPTPPPPSSTASSSLPPPTPLLPKHQQAPPPPPPTQSH 120
>01_01_0925 - 7306881-7308486,7308797-7308906
Length = 571
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 673 LPGGKCTSNGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIW 548
L G C + + G + + +N+ GC + G ++G VK+W
Sbjct: 288 LSDGSCADSFVAHDGAINAMLINEADGC-IFTGSADGTVKMW 328
>08_02_0248 - 14757365-14757426,14758550-14758991
Length = 167
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 519 PRVCEQRGRSQIFTQPSESPAATLQPPI*FTASLQTPPVPLSPFDVHFPPGSNVT 683
P+ R R Q+ + + AA ++PP+ TPP P P P G VT
Sbjct: 9 PKASPVRSRPQLPASAAAAAAAAVEPPLQLQQLHTTPPPPPPPL---MPAGGEVT 60
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 549 QIFTQPSESPAATLQPPI*FTASLQTPPVPLSPFDVHFPPGSNVTQ 686
QI T+ S TL PP+ PP+P SP V PP + +TQ
Sbjct: 1101 QIDTKCRTSDRHTLGPPLPDDRPPSPPPLPSSPPPVPPPPPAPITQ 1146
>03_01_0393 -
3062859-3062972,3063027-3063311,3063472-3063759,
3063844-3064161,3064232-3064415,3064504-3064659,
3066394-3066620,3066734-3066804,3067090-3067534
Length = 695
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 670 PGGKCTSNGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPRC 533
PG G G+G L++ +GG GD EGCV D P C
Sbjct: 199 PGEVLALMGPSGSGKTTLLSI--LGGRVAGPGDVEGCVSYNDEPYC 242
>02_02_0706 +
13126176-13126644,13128666-13128867,13129424-13129501,
13131295-13131466
Length = 306
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 667 GGKCTSNGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPR 536
GG+ S+G T + A N G D CV++W+LP+
Sbjct: 129 GGRRRSSGSGPTPAKNRAAANSAKGTGEDLNDGGVCVRVWNLPK 172
>07_01_1034 -
8962703-8962748,8962831-8962991,8963068-8963905,
8963991-8964128,8964206-8964355,8964436-8964683,
8964825-8964953,8965735-8965960,8966909-8966975,
8967488-8967551,8968902-8969000,8969074-8969157,
8969240-8969321,8969412-8969460,8969664-8969769,
8970650-8970734,8970814-8970917,8970994-8971109,
8971187-8971373,8972005-8972113,8972633-8972761,
8973365-8973449,8973812-8973947,8974078-8974230,
8974488-8974634,8974801-8974941,8975580-8975903
Length = 1400
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -3
Query: 676 LLPGGKCTSNGLKGTGGVC-KLAVNQIGGCRVAA---GDSEGCVKIWDL 542
L+ G NG G G C ++ +QIG VA+ D GC++IW+L
Sbjct: 152 LVNKGNFYQNGDTGPCGPCSQIYFDQIGHHDVASLLNNDDPGCIEIWNL 200
>01_01_0646 +
4904790-4904996,4905437-4905483,4905623-4905662,
4905770-4905970,4906260-4906472,4906561-4906629,
4906711-4906840,4906934-4906974,4907063-4907287,
4907575-4907745,4908713-4908778
Length = 469
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 279 FKKKNNQPSILKSI*PVXLVRAVSEXES 362
FKKK N P LK I P ++RAV S
Sbjct: 394 FKKKRNFPITLKYIDPTYMIRAVRSNAS 421
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 625 VCKLAVNQIGGCRVAAGDSEGCVKIWDLPRC 533
VC + Q G +A G ++G V++WD RC
Sbjct: 242 VCSVGWAQ-RGTHLAVGTNQGKVQVWDATRC 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,268
Number of Sequences: 37544
Number of extensions: 286612
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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