Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1163
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034779-1|AAH34779.1|  491|Homo sapiens chromosome 19 open read...    31   5.8  
BC029824-1|AAH29824.1|  491|Homo sapiens chromosome 19 open read...    31   5.8  
AK093103-1|BAC04057.1|  505|Homo sapiens protein ( Homo sapiens ...    31   5.8  
AF007191-1|AAC02269.1|  589|Homo sapiens intestinal mucin protein.     31   5.8  

>BC034779-1|AAH34779.1|  491|Homo sapiens chromosome 19 open reading
           frame 45 protein.
          Length = 491

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 576 PAATLQPPI*FTASLQTPPVPLSPFDVHFPPGSNVTQAH 692
           PAAT +PP     SLQ PP  L P D  +     V++AH
Sbjct: 36  PAATREPP-----SLQPPPALLFPMDPRWDREERVSEAH 69


>BC029824-1|AAH29824.1|  491|Homo sapiens chromosome 19 open reading
           frame 45 protein.
          Length = 491

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 576 PAATLQPPI*FTASLQTPPVPLSPFDVHFPPGSNVTQAH 692
           PAAT +PP     SLQ PP  L P D  +     V++AH
Sbjct: 36  PAATREPP-----SLQPPPALLFPMDPRWDREERVSEAH 69


>AK093103-1|BAC04057.1|  505|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35784 fis, clone TESTI2005588. ).
          Length = 505

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 576 PAATLQPPI*FTASLQTPPVPLSPFDVHFPPGSNVTQAH 692
           PAAT +PP     SLQ PP  L P D  +     V++AH
Sbjct: 50  PAATREPP-----SLQPPPALLFPMDPRWDREERVSEAH 83


>AF007191-1|AAC02269.1|  589|Homo sapiens intestinal mucin protein.
          Length = 589

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 587 PATPDLIHGQLTNATRSFEPIRRALPSRKQRHTGASXXSVPTTASXGLXGS 739
           P+T D+I    TN TRS  P+   LP+   R T  S  + PT+ +  + GS
Sbjct: 420 PST-DMITSHTTNLTRS-SPLLATLPTTITRSTPTSETTYPTSPTSTVKGS 468


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,353,482
Number of Sequences: 237096
Number of extensions: 1684604
Number of successful extensions: 4741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4715
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)