Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1162
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 1.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 1.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 28 1.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 28 1.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 28 1.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 28 1.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 1.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 28 1.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 28 1.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 28 1.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 1.2
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 2.9
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 27 2.9
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 3.8
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 27 3.8
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 5.0
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 528 FTSSFLRNNWKSYVQYENDCKINKNRNAK 442
FT +R + YVQ + C+INK+RN K
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHK 969
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 528 FTSSFLRNNWKSYVQYENDCKINKNRNAK 442
FT +R + YVQ + C+INK+RN K
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHK 969
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 528 FTSSFLRNNWKSYVQYENDCKINKNRNAK 442
FT +R + YVQ + C+INK+RN K
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHK 969
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 528 FTSSFLRNNWKSYVQYENDCKINKNRNAK 442
FT +R + YVQ + C+INK+RN K
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHK 969
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 528 FTSSFLRNNWKSYVQYENDCKINKNRNAK 442
FT +R + YVQ + C+INK+RN K
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHK 969
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 528 FTSSFLRNNWKSYVQYENDCKINKNRNAK 442
FT +R + YVQ + C+INK+RN K
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHK 969
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 528 FTSSFLRNNWKSYVQYENDCKINKNRNAK 442
FT +R + YVQ + C+INK+RN K
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHK 969
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 528 FTSSFLRNNWKSYVQYENDCKINKNRNAK 442
FT +R + YVQ + C+INK+RN K
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHK 969
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 528 FTSSFLRNNWKSYVQYENDCKINKNRNAK 442
FT +R + YVQ + C+INK+RN K
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHK 969
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 528 FTSSFLRNNWKSYVQYENDCKINKNRNAK 442
FT +R + YVQ + C+INK+RN K
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHK 969
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 528 FTSSFLRNNWKSYVQYENDCKINKNRNAK 442
FT +R + YVQ + C+INK+RN K
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHK 969
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 279 TRLCYENDSSHEKGVKMAKRLDSYLYP 359
+RLCY DS H V++ +++ S +YP
Sbjct: 23 SRLCYGLDSDHVDPVEITQKVISGVYP 49
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 450 NAKKTVDKEAQIFCHN-TNMAVKYDNNNLQMLDKDSC 343
N T+D EAQ F HN + +V +DN+N + +C
Sbjct: 59 NPDPTMDLEAQTFNHNESTTSVGHDNSNSPPKCRKTC 95
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 483 YENDCKINKNRNAKKTVDKEAQIFCHNTNMAVKYDNNNLQMLD 355
YEN CK+ K ++ ++++ F N N YD+N D
Sbjct: 804 YEN-CKLGKLNLSETSINERVMGFSTNINETDNYDDNETTQSD 845
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 405 YDKIFVPLYLLFFSRF 452
Y +FVP+YL+ SRF
Sbjct: 199 YSSVFVPMYLVMLSRF 214
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 391 RHICIMTKYLCLFIYCFFRVSVFIYFAVIFVLNV 492
RH L +F YC F + F FA + + ++
Sbjct: 319 RHFSFGIVVLAIFSYCNFGIKQFFLFAAVMIYDL 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,015
Number of Sequences: 5004
Number of extensions: 50947
Number of successful extensions: 124
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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