Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1162
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    31   0.66 
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical...    30   2.0  

>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -1

Query: 609 YFTQNKMRLPK-IFITLLNML--FINFH**FTSSFLRNNWKSYVQYENDCKINKNRNAKK 439
           YF ++K  LP  +FI  + ++  F+ F   F S  + + W S   Y N  + + N    K
Sbjct: 63  YFRRSKRILPLYLFIVFVGVILVFVLFPKTFLSMNMDSAWSSIFLYHNMAQHSDNNMYFK 122

Query: 438 TVDKEAQIFCHNTNMAVK 385
            +++   IF H  ++ V+
Sbjct: 123 MLNQAEDIFTHTWSLCVE 140


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -1

Query: 510  RNNWKSYVQYENDCKINKNRNAKKTVDKEAQIFCHNTNMAVKYDNNNL 367
            R  WK+Y++    C+I +N NA++ +  E  IF H  N+++   N NL
Sbjct: 1312 RGLWKNYLE-AMICRILENENAEQELVIENSIFKH-LNVSMNRKNKNL 1357


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -1

Query: 510  RNNWKSYVQYENDCKINKNRNAKKTVDKEAQIFCHNTNMAVKYDNNNL 367
            R  WK+Y++    C+I +N NA++ +  E  IF H  N+++   N NL
Sbjct: 1312 RGLWKNYLE-AMICRILENENAEQELVIENSIFKH-LNVSMNRKNKNL 1357


>AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical
           protein Y51A2D.18 protein.
          Length = 550

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 428 KRHKYFVIIQI-WRSNMTIIIYRCWIKIAVKSFCHLNTF 315
           K+H+ ++ + I W  NM I  Y  W+    KS  ++N F
Sbjct: 210 KKHRMWINMAITWSPNMPIYSYFAWLASDWKSLAYINAF 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,412,755
Number of Sequences: 27780
Number of extensions: 276561
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)