Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1161
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    88   1e-18
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    45   1e-05
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    45   1e-05
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    30   0.31 
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.0  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 38/51 (74%), Positives = 42/51 (82%)
 Frame = -2

Query: 749 RELFKXXSEQFXXMFRRKAFLHWYXGEGMDXMEFPEAESNMNDXVSEYQQY 597
           +E+F+   +QF  MFRRKAFLHWY GEGMD MEF EAESNMND VSEYQQY
Sbjct: 375 QEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 746 ELFKXXSEQFXXMFRRKAFLHWYXGEGMDXMEFPEAESNMNDXVSEYQQ 600
           E +     +F  M+ ++AF+HWY GEGM+  EF EA  ++     +Y++
Sbjct: 390 EAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 746 ELFKXXSEQFXXMFRRKAFLHWYXGEGMDXMEFPEAESNMNDXVSEYQQ 600
           E +     +F  M+ ++AF+HWY GEGM+  EF EA  ++     +Y++
Sbjct: 386 EAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 743 LFKXXSEQFXXMFRRKAFLHWYXGEGM---DXMEFPEAESNMNDXVSEYQ 603
           LFK   +Q+  + +R AFL  Y  E +   D  EF  +   + D ++EY+
Sbjct: 387 LFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 447 FCFSYLYSNFNSFRLQHA**NNLGSTR 367
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 347 VFTFPVFFLDYEGQLWNVYCSKQLPSTTRA 258
           + TFP    D + QLWNV     L S +++
Sbjct: 72  ILTFPFLDPDSQNQLWNVNFRNLLKSLSKS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,567
Number of Sequences: 5004
Number of extensions: 33882
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)