Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1160
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113...    29   4.7  

>12_02_1039 +
           25610200-25610538,25611022-25611143,25611243-25611390,
           25611681-25611818,25612106-25612165,25612234-25612392,
           25612714-25612912,25613156-25613260,25613339-25613475,
           25613812-25614037,25614119-25614282,25614408-25614524,
           25614622-25614864,25614959-25615054,25615270-25615287
          Length = 756

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 190 HLGHVCVNTSMLLELFIVYLHCTANLLSVFVFQ 288
           H+G   V+ +  L + +VY+ CT +L+  F  +
Sbjct: 259 HIGEAAVSAAKFLFIIVVYILCTWSLIGFFALK 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,214,975
Number of Sequences: 37544
Number of extensions: 238852
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)