Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1160
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical pr...    31   0.60 
Z74038-4|CAA98495.1|  125|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z75547-7|CAA99904.1|  302|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical p...    27   9.8  

>U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical
           protein T07D1.3 protein.
          Length = 144

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 614 GWDESNYKGRCYQRSGFGGRQEVCSCXTDGCNS 516
           GW +      C +   +G + E+C C  D CNS
Sbjct: 89  GWQQKKTGEYCRKSRDYGKKGEICCCADDMCNS 121


>Z74038-4|CAA98495.1|  125|Caenorhabditis elegans Hypothetical
           protein F58B4.3 protein.
          Length = 125

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 599 NYKGRCYQRSGFGGRQEVCSCXTDGCNSA 513
           N    C   S FG     C C  DGCNS+
Sbjct: 74  NAAANCQNSSAFGVNGATCCCYGDGCNSS 102


>Z75547-7|CAA99904.1|  302|Caenorhabditis elegans Hypothetical
           protein R11D1.6 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 172 WTLLF*HLGHVCVNTSMLLELFIVYL 249
           W+L   HL +VCV  +++L  +++YL
Sbjct: 6   WSLFCGHLQNVCVCLTIILNCYMIYL 31


>Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical
           protein F54D5.5b protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 471 STPEVXAITLQPTVVSRVTCVHHSSKDNLNRK 376
           ST EV +I+   +  S+VT + HS+ D  NRK
Sbjct: 450 STKEVDSISPSSSADSQVTLLDHSTIDKENRK 481


>Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical
           protein F54D5.5a protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 471 STPEVXAITLQPTVVSRVTCVHHSSKDNLNRK 376
           ST EV +I+   +  S+VT + HS+ D  NRK
Sbjct: 385 STKEVDSISPSSSADSQVTLLDHSTIDKENRK 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,448,202
Number of Sequences: 27780
Number of extensions: 219167
Number of successful extensions: 696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)