Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1158
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    28   1.6  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    27   2.1  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    27   2.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.3  

>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 564 QCTRRSPWRLYLRQW--S*RFSKPPSL 638
           +C RRS + LY+ +W  +  F+KPPSL
Sbjct: 283 ECIRRSVFCLYILEWFLALIFNKPPSL 309


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 553 AVRTNVLVEALGGYTFVNGVSVFQNRLLFSTDLXFSFEI 669
           AV+ N   E+   +   NGVS  + R L +TDL   F+I
Sbjct: 61  AVKENKDTESSSSHFVPNGVSNSKKRKLVATDLDVDFDI 99


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 615 ANSIDEGIASKGFYEYIGPDGFMYRVDYTADENGFRXKVKRL 490
           A+  D G        +  PDG    +++  D+NG + KV R+
Sbjct: 10  ADDEDYGTGLPSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRV 51


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 611 TPLTKV*PPRASTSTLVLTASCTEWTTPP 525
           TP+T   PP  S+ST + T +CT  T+ P
Sbjct: 407 TPVTPTVPP-TSSSTPLTTTNCTTSTSVP 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,545
Number of Sequences: 5004
Number of extensions: 49026
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)