Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1158
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    34   0.001
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.9  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 594 IASKGFYEYIGPDGFMYRVDYTADENGFRXKVKRLET 484
           + S+G   Y  PDG    + Y ADENGF+ +   + T
Sbjct: 69  VVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPT 105


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 373 TPTNLIDLLD*VRIIFKESSSHIGHE*NRSRIRHLEK 263
           T   LI  LD +R  +K+SSS +    NR+ I  L +
Sbjct: 321 TFNQLISSLDEIRTRYKDSSSSVEGWENRATIPELNE 357


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -3

Query: 617 TLTPLTKV*PPRASTSTLVLTASCTE---WTTPPTKTDSV 507
           T+T +T       +T+T   T + T+    TTPP + D V
Sbjct: 657 TITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEV 696


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +1

Query: 190 LNCDTFMRYNINMRKIRLKQINANIFLNVEFVNDFIRDL 306
           L  D  M         RLK  N   +LN  +   F+RDL
Sbjct: 58  LQFDVHMMLQFRYLDARLKFSNIAPYLNQIYGGQFVRDL 96


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 172 VKYFRFRCDELKVCL 128
           V Y   RCD++ +CL
Sbjct: 14  VSYMMVRCDDITLCL 28


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 91   NSKYKLHLPKQPRDILLVRRNE 156
            N   KLH+PK     +L R NE
Sbjct: 1481 NHNEKLHIPKDKSVSVLSRENE 1502


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 385 ILIATPTNLIDLLD*VRIIF 326
           IL+ATP  L+D ++  R+ F
Sbjct: 326 ILVATPGRLLDFVEKGRVKF 345


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 131 SRGCLGKCNLYLELSN*NIF 72
           S  C G+C+ YL++S   I+
Sbjct: 50  SYACRGRCSSYLQVSGSKIW 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,585
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)