Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1154
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 260 8e-71
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 260 1e-70
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 258 3e-70
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.39
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.8
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 2.8
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 3.7
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 6.4
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 8.5
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.5
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 8.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.5
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 260 bits (638), Expect = 8e-71
Identities = 117/179 (65%), Positives = 146/179 (81%)
Frame = -2
Query: 599 TYPAGFMXVVSIEKTNELFRXIYDVKGRFXIXXITXEEAKYKLCKVKRVATGPKNVPYLV 420
T+P GFM V+S+EKT E FR +YD+KGRF + IT EEAKYKLCKVKRV G K VP+LV
Sbjct: 81 TFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLV 140
Query: 419 THDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRER 240
THDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE
Sbjct: 141 THDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREH 200
Query: 239 HPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 63
H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 201 HLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 260 bits (636), Expect = 1e-70
Identities = 117/179 (65%), Positives = 146/179 (81%)
Frame = -2
Query: 599 TYPAGFMXVVSIEKTNELFRXIYDVKGRFXIXXITXEEAKYKLCKVKRVATGPKNVPYLV 420
T+P GFM V+S+EKT E FR +YD+KGRF + IT EEAKYKLCKVKRV G K VP+LV
Sbjct: 81 TFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLV 140
Query: 419 THDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRER 240
THDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE
Sbjct: 141 THDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREH 200
Query: 239 HPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 63
H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 201 HLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 258 bits (633), Expect = 3e-70
Identities = 116/179 (64%), Positives = 146/179 (81%)
Frame = -2
Query: 599 TYPAGFMXVVSIEKTNELFRXIYDVKGRFXIXXITXEEAKYKLCKVKRVATGPKNVPYLV 420
T+P GFM V+S++KT E FR +YD+KGRF + IT EEAKYKLCKVKRV G K VP+LV
Sbjct: 81 TFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLV 140
Query: 419 THDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRER 240
THDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE
Sbjct: 141 THDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREH 200
Query: 239 HPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 63
H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 201 HLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.39
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +3
Query: 132 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 257
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 378 QSQRFHPVRHRNYED 334
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 320 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 216
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 411 WPHHPLPRPTYQSQR 367
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 408 PHHPLPRPTYQSQRFHPVRHRNYEDY 331
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 263 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 168
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 181 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLM 324
V + P ES M + K+ L T P RP L+P + + P S L+
Sbjct: 414 VRERAPEESPMTFLQKKMAALP--TSSPVRPMLKPTLQLQNSPLSKLV 459
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 405 HHPLPRPTYQSQRFHPVR 352
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 575 VVSIEKTNELFRXIYDVKGRFXIXXITXEEAKYKLCKVKRVATGPKNVPYL-VTHDGRTI 399
V S+EK N++F Y+V + + + K+ ++ ++ KNVP + V H +
Sbjct: 1719 VSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEML 1778
Query: 398 R 396
+
Sbjct: 1779 K 1779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,255
Number of Sequences: 5004
Number of extensions: 46073
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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