Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1153
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    29   0.39 
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   8.5  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.5  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -2

Query: 554 KIKALEKANVIVTRSPAKMGVELHKEMKRLE 462
           K +ALE A V ++RSPA +G  + +E+ +L+
Sbjct: 300 KFEALEAAGVRISRSPATLGSLIVEELNKLK 330


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 383 YCYYLFSIVVTICLVLLF 330
           + +YLF+IV+T C+  +F
Sbjct: 543 FIFYLFTIVITFCMSAVF 560


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 265 YMYVRD*ILYFYENIN 312
           Y Y++D ILYF EN N
Sbjct: 739 YFYLKDNILYFAENRN 754


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 134 NNYLIEFLTNESAYLIRXTI 193
           NNYLI F+T +   L+  TI
Sbjct: 365 NNYLINFITQKLVELVHETI 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,776
Number of Sequences: 5004
Number of extensions: 41461
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)