Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1152
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   3.1  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    27   3.1  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   7.1  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -1

Query: 241 FRVS*IFT*RINSNSVNRLVTFFCNFME*HILNLGCSTATTYLLFVGLSTVITHTYFFQF 62
           F ++ +F  ++NS  +N+ +++   F+   +  LG  T  T+L F     VI    +F  
Sbjct: 149 FFLTILFLSKLNSVPLNKKISYLYTFLLAIVSVLGFFTRITFLAF-----VIAPYIYFSV 203

Query: 61  KCF 53
           +CF
Sbjct: 204 RCF 206


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -2

Query: 429 IFFILMNIILR-I*FALPRPLIVYWVIYCDYTIIFLFNFYFHVYHIGLTDKLRFILIRLR 253
           IF  L +++ + + +  P P  + + I   Y  I     +  +++I  TDK + + I + 
Sbjct: 106 IFSFLYSLLFKNLDYIQPGPTFLIFAILYQYYYIVPSTVFVRLFNIKFTDKFQMV-IPMI 164

Query: 252 GSPLSVFLKYLLNALI 205
           G   S F    +NA +
Sbjct: 165 GLAFSHFPSTFINAFL 180


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 505 KRILFPLFLSYLFNELIQIQ*IG**HFFYFNEYH 404
           +R +   FL+ LF  ++ I  +    F YFNEYH
Sbjct: 413 RRFIVAGFLNCLFAPIVAIYLVIHNFFRYFNEYH 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,642
Number of Sequences: 5004
Number of extensions: 60955
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)