Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1152
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U80023-11|AAG24044.1|  331|Caenorhabditis elegans Seven tm recep...    30   1.6  
AF025460-4|AAB70987.1|  156|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical p...    28   6.6  

>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 143 FRLFYRDHLFIV-CWFIYCDYTYILF 69
           + LF  DHLFI   WF+ C Y  +LF
Sbjct: 5   YSLFSLDHLFISRYWFVVCSYCSLLF 30


>U80023-11|AAG24044.1|  331|Caenorhabditis elegans Seven tm receptor
           protein 47 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -2

Query: 330 FLFNFYFHVYHIGLTDKLRFILIRLRGSPLSVFLKYLLNALIPIQ*IGW*HFFVTLWNNI 151
           F+F   FH+  I  T K   I++ + G  LS+ L+ L    +     GW +F +  W N+
Sbjct: 26  FIFLTVFHIRGISGTYKTMIIIMAVMGILLSI-LELLARPFVHNYNKGWIYFSLNSWMNV 84


>AF025460-4|AAB70987.1|  156|Caenorhabditis elegans Hypothetical
           protein F53A3.1 protein.
          Length = 156

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -1

Query: 643 RHITFL*F*LITYSEFSLLYQF*ILILNFFKVTMIDQQNENYSNM 509
           RH  ++   ++T+S  +L Y F  ++L FF++T +   + N++ M
Sbjct: 34  RHQWYMYNAILTFSFLALFYSFFTILLRFFELTELHFMSFNFAAM 78


>Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical
           protein C48B4.2 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 429 IFFILMNIILRI*FALPRPLIVYWVIYCDYTIIFLF 322
           IF I+ NI++++   +P  L+  W IY  Y +  LF
Sbjct: 182 IFHIIFNILIQLAIGVPLELVHRWRIYILYFMGVLF 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,217,966
Number of Sequences: 27780
Number of extensions: 321252
Number of successful extensions: 651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)