Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1151
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    38   8e-04
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    38   0.001
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    33   0.018
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    31   0.13 
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    30   0.22 
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   1.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   4.8  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   6.4  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   6.4  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   8.4  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 12  CFYCDGGLKDWESDDVPWEQHARWFDRCAY 101
           C YCD  L DWE DD P+ +H R    C +
Sbjct: 163 CLYCDINLHDWEPDDDPYTEHKRRRADCVF 192



 Score = 31.9 bits (69), Expect = 0.056
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 12  CFYCDGGLKDWESDDVPWEQHARWFDRCAYVQLVKGRD 125
           C+ C     DWE DD P ++H      C +  ++  ++
Sbjct: 68  CYMCTKSFYDWEDDDDPLKEHITHSPSCPWAYILSSKN 105


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = +3

Query: 198 STKNVAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCALS-------TDKCPMC 356
           S K V    ++ L D K C IC     N+   PCGH+  C  C LS       T KCP+C
Sbjct: 190 SKKQVVPSSQR-LADYK-CVICLDSPENLSCTPCGHIF-CNFCILSALGTTAATQKCPVC 246

Query: 357 XQDV 368
            + V
Sbjct: 247 RRKV 250


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 33.5 bits (73), Expect = 0.018
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
 Frame = +3

Query: 213 AQEGEKHLDDSKICKIC---YSEERNVCF-VPCGHVV--ACAKCAL--STDKCPMCXQDV 368
           A+ G K+ D  + C IC   YSEE  +   +PC H+   AC    L  ++D CP+C Q V
Sbjct: 486 AERGSKYFDQRE-CTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSV 544


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
 Frame = +3

Query: 195 DSTKNVAQ---EGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCAL------STDKC 347
           D   NVA      E+  +D +IC IC       C +PC H + C  CAL       T +C
Sbjct: 59  DPVSNVATVDASKEEQDEDEQICFICAEGITYSCVLPCNHRM-CHVCALRLRALYKTKEC 117

Query: 348 PMC 356
             C
Sbjct: 118 TFC 120


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = +3

Query: 243 SKICKICYSEERNVCFVPCGHVVACAKC----ALSTD-KCPMC 356
           S  C +C    RN C  PC   + C +C     L +D +CP C
Sbjct: 279 SLACTLCKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNC 321


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = +3

Query: 252 CKICYSEERNVCFVPCGHVVACAKCAL----STDKCPMC 356
           C+IC+    +    PCGH   C  C +     + +CP C
Sbjct: 169 CQICFGMLYDPVVSPCGHTF-CGPCLMQALTQSPQCPTC 206


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +3

Query: 270 EERNVCFVPCGHVVACAK--CALSTDK--CPMCXQ 362
           EE ++CF PC   ++C    C     +  CP C +
Sbjct: 580 EEEHICFRPCNKKLSCGNHFCQHMCHRGPCPRCLE 614


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
 Frame = -1

Query: 257 FTYFRVIQMFLALLSD------------VLSRIIGXGLF-FFASRYRSGLRL-----HLL 132
           F  FRV QMF  +L D            V + +IG  +F F    Y +  +       + 
Sbjct: 586 FPVFRVCQMFAVILKDFVENYSNRPVDRVFTTLIGYCMFTFLGISYLNRKQFLFNDPQIR 645

Query: 131 NVVTSFHQ-LHVRAAVEPSGVLFPRNVIAFPIF 36
           NV  +F + L    ++   G++F   ++ FPIF
Sbjct: 646 NVELAFREVLRQCGSIAKFGIIFSIELVVFPIF 678


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 18  YCDGGLKDWESDDVPWEQHARWFDRCAYVQLVKGRDYIQKV 140
           +C G L DW +         R  D+ A VQL K +  I+++
Sbjct: 693 FCLGNLHDWNTSSSVDVGELRGIDKLALVQLDKFQTEIREL 733


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +3

Query: 228 KHLDDSKICKICYSEERNVCFVPCGHVVACAKCALS-TDKCPMC 356
           K LD S  C IC+   R      C H   C+ C      + PMC
Sbjct: 21  KGLDSSLRCLICHEYFRAPLITSCSHTF-CSFCIRDYLREHPMC 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,376
Number of Sequences: 5004
Number of extensions: 33366
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)