Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1151
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           23   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.5  

>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 128 HSEGEVGGHCD 160
           HS G+ GGHC+
Sbjct: 40  HSLGKAGGHCE 50


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -3

Query: 465 FQHASGPPGXVXSIQARXGRVLSRXVXPHRIRXRPAYTS 349
           + H + P G   S        L+  + PHR R     TS
Sbjct: 510 YHHVAPPSGHHASSAPLLAATLAGGLCPHRRRANSGSTS 548


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -3

Query: 402 LSRXVXPHRIRXRPAYTSGTCPSTARTWRTPPR 304
           +S  V P       A  +GT P+    W  PPR
Sbjct: 460 MSVQVDPMAASVVAAALTGTYPTLLPQWCLPPR 492


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 93  CAYVQLVKGRDYIQKV 140
           CAY QL++  D I  +
Sbjct: 266 CAYKQLIESEDAIYNI 281


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +3

Query: 39  DWESDDVPWEQHARWFDRC 95
           +W+   VP E+H +++  C
Sbjct: 200 EWDILGVPAERHKKYYPCC 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,032
Number of Sequences: 438
Number of extensions: 2473
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)