Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1149
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    36   0.007
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    30   0.33 
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    28   1.8  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 317 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLXR 424
           G++ YNF   +P   P S E + G+VRY ++ T+ R
Sbjct: 273 GEYTYNFDLAIPNCFPESVEAKMGWVRYFLEATVER 308


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
 Frame = +2

Query: 317 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLXRPWKFDQET--KMAFTVINALDLNL 490
           G+++YNF   +    P S + + G V Y ++  + R   F  ++  ++   +I +   + 
Sbjct: 191 GEYVYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTFSGKSTGRIPIELIRS-PCST 249

Query: 491 NPSYKEPIHIQLEKTFCCFCCASPPLAVDVQAPVSGYCPGQVIPLKIDIENKSNVQLHLV 670
           + +  EPI +   K++         L  +VQ        GQV+P+         V+ H +
Sbjct: 250 SVATSEPILVS--KSW------EDRLHYEVQVGEKCVVMGQVVPVNFKFTLLGEVKFHKL 301

Query: 671 KIFL 682
           ++FL
Sbjct: 302 RLFL 305


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 85  IVLHNMYSIDYPNRY*PSLRPIF 17
           IVL +  +ID P  Y PSLRP F
Sbjct: 111 IVLPSFDAIDVPKAYHPSLRPYF 133


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 378 PSKDEGRTGGNVQVKLYMCFPCGISISFP 292
           P  +E +  G   V+LY C  CG +  FP
Sbjct: 119 PPNEEEKWNGVRNVELYQCNVCGHNQRFP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,408,882
Number of Sequences: 5004
Number of extensions: 73232
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)