Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1149
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788...    29   4.3  
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708...    28   7.5  
07_03_0393 - 17630097-17630367,17630483-17630709                       28   9.9  
03_02_0900 - 12262149-12262565,12262924-12263061,12263387-122634...    28   9.9  
01_01_0363 + 2850954-2853675,2853819-2854225                           28   9.9  

>05_05_0357 +
           24377989-24378039,24378601-24378632,24378724-24378818,
           24379165-24379237,24379804-24379867,24380465-24380732,
           24381132-24381202,24382028-24382084,24382302-24382403,
           24382544-24382588,24383616-24383693,24384350-24384400,
           24384475-24384556,24384883-24384956,24386093-24386144,
           24386230-24386288,24386380-24386456,24386692-24386778,
           24387011-24387101
          Length = 502

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 406 DSVSDITMFPFKR*RQDRWQCAGKIIYVFPXWYF 305
           DSV+ I+ +PF R    R +CA  +I +F  +YF
Sbjct: 149 DSVAQISFYPFIRNDIIRTKCANVLISMFLWFYF 182


>01_01_0898 +
           7078900-7079079,7080269-7080301,7080480-7080653,
           7080866-7083890,7084253-7084596
          Length = 1251

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 517 HSIRKDVLLFLLRITTFSSGCAGSCIWLLSR 609
           HS  +  L FLL + T + GC   CI+L+ R
Sbjct: 901 HSNSRHFLRFLLPVVTVAFGCMVICIFLMIR 931


>07_03_0393 - 17630097-17630367,17630483-17630709
          Length = 165

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 554 ASPPLAVDVQAPVSGYCPGQVIPLKIDI 637
           + P L  D  +P+   C G+V+P+K+++
Sbjct: 105 SDPNLGADNASPLLSDCTGEVVPVKVEL 132


>03_02_0900 -
           12262149-12262565,12262924-12263061,12263387-12263446,
           12263557-12263619,12264181-12264243,12264420-12264482,
           12265076-12265153,12265673-12266080
          Length = 429

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 8   IKKEYGSQRRLISIWIINGIHIMQDNTVNGRIEYVFDSPKKVXGIHVKIXGEAHTEWYES 187
           IKKE     ++ SI +IN     Q+ ++  R+  + +   KV  + VK+  EA     E 
Sbjct: 201 IKKEVALDNKVRSIEVINDALTHQETSLKERLSGL-EETNKVLLVQVKVLEEASNNTVEE 259

Query: 188 KQ 193
            Q
Sbjct: 260 SQ 261


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 191 QEENAQGKTXSTDTMHTGNEEYFQISYYLL--GSNTGNEIEIPXGKHIYN--FTCTL 349
           Q    +G+  S +      E+Y +ISYY L  GSN  +E  +  GK  Y   + CTL
Sbjct: 685 QHRKLKGRQNSQEISPVIEEQYQRISYYALSRGSNEFSEANL-LGKGRYGSVYKCTL 740


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,151,384
Number of Sequences: 37544
Number of extensions: 437492
Number of successful extensions: 888
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)