Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1144
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...   198   6e-52
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    33   0.039
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    29   0.48 
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    27   3.4  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   6.0  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    26   6.0  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   7.9  

>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score =  198 bits (483), Expect = 6e-52
 Identities = 93/153 (60%), Positives = 111/153 (72%)
 Frame = +1

Query: 100 TVDTKPYEGQKPGTSGLRKKVKVFIQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLV 279
           T+ TKPYEGQ+PGTSGLRKKV VF Q NY ENF+Q  +DV + S  G+ LVVGGDGRY  
Sbjct: 4   TIPTKPYEGQRPGTSGLRKKVTVFEQPNYVENFVQATMDVVEPSAKGAHLVVGGDGRYFN 63

Query: 280 KEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPXGADEDF 459
              +  I  I+A NGV K+IVG NG LSTPA S+IIRKYK  GGI+LTASHN  G   DF
Sbjct: 64  FHAIQVIAAIAAGNGVEKIIVGTNGYLSTPAASHIIRKYKLTGGIILTASHNAGGPKNDF 123

Query: 460 GIKFNCSNGGPASDATTDAIYKLTTXIKQYKIV 558
           GIK+N  NGGPA ++ T+ IY +T  I +YK+V
Sbjct: 124 GIKYNLGNGGPAPESVTEKIYSITKTISEYKMV 156


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
 Frame = +1

Query: 136 GTSGLRKKVKV-FIQENY------TENFIQCILD-VNKTSLIGSTLVVGGDGRYLVKEVV 291
           GTSGLR ++   F + N       ++ F + +L  V   + +G  +V+G D R+      
Sbjct: 48  GTSGLRAEIGAGFARMNCLTVIQASQGFAEYLLQTVPSAAKLG--VVIGHDHRHKSNTFA 105

Query: 292 DKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNP 438
                +    G          ++ TP V + ++   T  G+++TASHNP
Sbjct: 106 RLTAAVFLQKGFKTYFFDH--LVHTPLVPFAVKTLGTAAGVMITASHNP 152


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 391 KYKTLGGIVLTASHNPXGADEDFGIKFNCSNGG 489
           K KT+G +++TASHNP    ED G+K   ++GG
Sbjct: 40  KGKTIG-VMITASHNPV---EDNGVKIIDADGG 68


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = +1

Query: 283 EVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPXGADEDFG 462
           +  D  I     NG   + +G  G+        ++R+Y +LG   +T +HN    D  F 
Sbjct: 122 DCADDAIAAFRNNGKIAIALGVEGLHQVDTSLAVLRQYYSLGVRYITLTHN---CDNPFA 178

Query: 463 IKFNCSNGG 489
              +   GG
Sbjct: 179 TAASSITGG 187


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 379 YIIRKYKTLGGIVLTASHNPXGADED-FGIKFNCSNGGPASDATTDAI 519
           Y+I+KY+ L  IV+  S+      E+   I  +  +  P+  AT DA+
Sbjct: 129 YVIKKYQNLKNIVVRLSNGTEACKEEAVLINAHVDSTLPSPGATDDAL 176


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 198 KILRVVFLNENFNFFTQSTCARLLALIRFSVNRYTVRH 85
           K+L +VFL+  F  + QS C RL ++    + R    H
Sbjct: 104 KLLFIVFLSNLFAVYLQSLCIRLGSVTGMDLARNCREH 141


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 283 LSRDTFRLLRQPGSILSKR 227
           +SR+T RL+ +PGS++S R
Sbjct: 546 VSRETPRLMARPGSLVSNR 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,482
Number of Sequences: 5004
Number of extensions: 51373
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)