Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1144
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117...   169   2e-42
10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581...   148   5e-36
06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867           31   1.2  
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947...    29   3.5  
12_02_0473 + 19474784-19474792,19475707-19476519,19476892-194769...    28   6.2  
03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484     28   6.2  
07_01_0688 - 5211484-5211626,5211730-5211826,5211930-5212105,521...    28   8.2  
04_04_0236 + 23825368-23825763,23826229-23828667                       28   8.2  

>03_05_0898 +
           28610123-28610203,28611190-28611271,28611666-28611721,
           28612253-28612366,28612484-28612546,28612633-28612752,
           28612850-28612950,28613097-28613156,28613243-28613342,
           28613421-28613575,28613661-28613756,28614269-28614403,
           28614510-28614573,28614648-28614729,28615038-28615213,
           28615302-28615378,28615637-28615769,28615939-28616055,
           28616394-28616398,28616564-28616684,28616711-28617751
          Length = 992

 Score =  169 bits (410), Expect = 2e-42
 Identities = 84/160 (52%), Positives = 108/160 (67%), Gaps = 7/160 (4%)
 Frame = +1

Query: 109 TKPYEGQKPGTSGLRKKVKVFIQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRYLVKE 285
           T P++GQKPGTSGLRKKV VF Q +Y +NF+Q   +      + G+T+VV GDGRY  K+
Sbjct: 11  TTPFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPADKVKGATIVVSGDGRYFSKD 70

Query: 286 VVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKY------KTLGGIVLTASHNPXGA 447
            V  I K++AANGV ++ VGQN ++STPAVS +IR+       K  G  +LTASHNP G 
Sbjct: 71  AVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFILTASHNPGGP 130

Query: 448 DEDFGIKFNCSNGGPASDATTDAIYKLTTXIKQYKIVPDL 567
            EDFGIK+N  NGGPA ++ TD I+  TT I +Y I  DL
Sbjct: 131 TEDFGIKYNMENGGPAPESVTDKIFSNTTTITEYLIAEDL 170


>10_02_0145 -
           5817684-5817751,5817850-5817955,5818145-5818222,
           5818334-5818380,5818476-5818557,5818688-5818829,
           5819027-5819142,5819244-5819318,5819413-5819531,
           5820569-5820636,5820739-5820803,5820887-5820968,
           5821462-5821514,5821589-5821711,5821986-5822054,
           5822581-5822649,5822735-5822786,5823423-5823475,
           5823562-5823654,5823762-5823806,5824616-5824777
          Length = 588

 Score =  148 bits (358), Expect = 5e-36
 Identities = 73/141 (51%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
 Frame = +1

Query: 157 KVKVFIQENYTENFIQCILD-VNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVSK 333
           KVKVF QENY  N+IQ + + +     +G TLV+GGDGRY  K+    I KI+A NGV K
Sbjct: 54  KVKVFQQENYLANWIQALFNSLPPEDYVGGTLVLGGDGRYFNKDAAQIITKIAAGNGVGK 113

Query: 334 LIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPXGADEDFGIKFNCSNGGPASDATTD 513
           ++VG+NG+LSTPAVS +IRK +  GG +++ASHNP G D D+GIKFN S+G PA +  TD
Sbjct: 114 ILVGRNGLLSTPAVSAVIRKRQANGGFIMSASHNPGGPDNDWGIKFNYSSGQPAPETITD 173

Query: 514 AIYKLTTXIKQYKI--VPDLN 570
            IY  T  I + K   +PD++
Sbjct: 174 QIYGNTLSISEIKTADIPDVD 194


>06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867
          Length = 237

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/54 (40%), Positives = 25/54 (46%)
 Frame = +3

Query: 438 GRCGRGLRHKVQLQ*RGPGFRCYHRCHLQTHHLDKAVQDCXRFKLRH*QNRXTY 599
           GRCG G R + +   R  G    H C L   HL    Q C RF+LR  Q   TY
Sbjct: 39  GRCGCGRRREGKWP-RPDGGCGLHLCRLCRRHL----QPCLRFRLRPRQPAATY 87


>09_02_0450 +
           9468495-9468528,9468947-9469062,9470031-9470858,
           9470955-9471107,9471194-9471604
          Length = 513

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 289 VDKIIKISAANGVSKLIVGQNGILSTPAVSYIIR 390
           +D+++K  +  GV  L +  NG+ ST A SY+ R
Sbjct: 105 IDRVMKKHSGIGVKALTIEFNGLFSTKARSYLER 138


>12_02_0473 +
           19474784-19474792,19475707-19476519,19476892-19476963,
           19478379-19478594
          Length = 369

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 406 GGIVLTASHNPXGADEDFGIKFNC--SNGGPASDATTDAIYKLTTXIKQYKIVP 561
           GG+ +  +  P   DE    + +    NGG   D TT     LTT + ++  +P
Sbjct: 10  GGVGIGLASPPPSVDEPVSFQESSVSRNGGKIEDGTTKETVSLTTDVPEFPELP 63


>03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484
          Length = 355

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 325 VSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPXGADEDFGI 465
           V KL   Q  + S   V   I   K + G+V+   H P   DED G+
Sbjct: 157 VQKLSTKQPSLESRQMVLQEIAAEKGIAGVVVHVVHEPSSHDEDSGL 203


>07_01_0688 -
           5211484-5211626,5211730-5211826,5211930-5212105,
           5212240-5212631,5212712-5212960,5213046-5213188,
           5213283-5213402,5214491-5214835
          Length = 554

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 409 GIVLTASHNPXGADEDFGIKFNCSNGGPAS 498
           G+V+TASHNP     D G+K   ++GG  S
Sbjct: 68  GVVITASHNPV---RDNGVKIVDADGGMLS 94


>04_04_0236 + 23825368-23825763,23826229-23828667
          Length = 944

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 174 SRKLHGEFYSMHFGCEQNLFDRIDPGCRRRRKVSRERGC 290
           S  + G  Y   F C +    RI PG + RR++  + GC
Sbjct: 213 SHSVDGVKYRATFVCYKGGIARIKPGLKARRRLVAKTGC 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,491,797
Number of Sequences: 37544
Number of extensions: 341341
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)