Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1144
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-2|AAA83163.1|  568|Caenorhabditis elegans Hypothetical pr...   206   9e-54
AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical ...    41   7e-04
AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical ...    41   7e-04
AC024787-1|AAF60607.2|  469|Caenorhabditis elegans Hypothetical ...    30   1.8  
AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF000298-7|AAC48256.1|  239|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    28   7.4  
Z92777-7|CAI79120.1|  294|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL137227-10|CAB76717.1|  391|Caenorhabditis elegans Hypothetical...    27   9.8  
AL132848-6|CAB76731.1|  391|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U41533-2|AAA83163.1|  568|Caenorhabditis elegans Hypothetical
           protein R05F9.6 protein.
          Length = 568

 Score =  206 bits (504), Expect = 9e-54
 Identities = 104/177 (58%), Positives = 125/177 (70%), Gaps = 5/177 (2%)
 Frame = +1

Query: 97  VTVDTKPYEGQKPGTSGLRKKVKVFIQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRY 273
           V   TKP+ GQKPGTSGLRK+V  F Q+NYTENF+Q ILD    S   GS LVVGGDGR+
Sbjct: 6   VETPTKPFAGQKPGTSGLRKRVPEFQQQNYTENFVQAILDAGLGSKKKGSQLVVGGDGRF 65

Query: 274 LVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYK----TLGGIVLTASHNPX 441
           L  E  + IIKI+AANG+S+LIVGQNG LSTPA+S +IRK        GGI+LTASHNP 
Sbjct: 66  LSMEATNVIIKIAAANGLSRLIVGQNGFLSTPALSNLIRKGHEGRVVDGGIILTASHNPG 125

Query: 442 GADEDFGIKFNCSNGGPASDATTDAIYKLTTXIKQYKIVPDLNCAIDKIDXHTFKVD 612
           G   DFGIKFNC NGGPA D  TDAIY++TT I +Y I  DL C   ++  + + ++
Sbjct: 126 GPKGDFGIKFNCENGGPAPDQVTDAIYQITTKIDKYLIAKDLECDFTQVGRYEYDIE 182


>AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5b protein.
          Length = 459

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 25/80 (31%), Positives = 38/80 (47%)
 Frame = +1

Query: 247 LVVGGDGRYLVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTA 426
           + +G DGRY  +   +    +   N +   +  +  +  TP VS+   K     G+++TA
Sbjct: 93  VAIGFDGRYNSRRFAELSANVFVRNNIPVYLFSE--VSPTPVVSWATIKLGCDAGLIITA 150

Query: 427 SHNPXGADEDFGIKFNCSNG 486
           SHNP    ED G K   SNG
Sbjct: 151 SHNP---KEDNGYKAYWSNG 167


>AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5a protein.
          Length = 595

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 25/80 (31%), Positives = 38/80 (47%)
 Frame = +1

Query: 247 LVVGGDGRYLVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTA 426
           + +G DGRY  +   +    +   N +   +  +  +  TP VS+   K     G+++TA
Sbjct: 93  VAIGFDGRYNSRRFAELSANVFVRNNIPVYLFSE--VSPTPVVSWATIKLGCDAGLIITA 150

Query: 427 SHNPXGADEDFGIKFNCSNG 486
           SHNP    ED G K   SNG
Sbjct: 151 SHNP---KEDNGYKAYWSNG 167


>AC024787-1|AAF60607.2|  469|Caenorhabditis elegans Hypothetical
           protein Y46C8AR.1 protein.
          Length = 469

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 277 VKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIV-LTASHNPXGADE 453
           V EV++K    + A   S LI+      +T  VS I+ K +   G+V   ASH P G   
Sbjct: 258 VFEVINKFYDNTQATCGSNLIILSKRYPNTADVSNIVLKVRKSQGMVNFLASHAPSGGTV 317

Query: 454 DFGIKFNCS 480
             G+   CS
Sbjct: 318 SQGLYDLCS 326


>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 309 DLNNFINNLFHEIPSVSSDNQGRSYQRGFVHI 214
           D N F+NN++++  ++  D+ G S + GF+ I
Sbjct: 153 DGNVFVNNVYNQTINIMEDDSGFSGETGFLFI 184


>AF000298-7|AAC48256.1|  239|Caenorhabditis elegans Hypothetical
           protein W03D2.2 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 157 KVKVFIQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVVDKIIKIS 312
           K+K  I  ++T NF + I+      L     ++GGD  +L+  +   II ++
Sbjct: 56  KIKDLICFSFTSNFAKNIVGALNLKLYDIKCMMGGDAHHLLFNICKNIIYVT 107


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 250 VVGGDGRYLVKEV--VDKIIKISAANGVSKLIVGQNGILSTPAVSYIIR 390
           VV GDGR +V  +   D++I +   +   +      G+L+TP   YIIR
Sbjct: 15  VVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIR 63


>Z92777-7|CAI79120.1|  294|Caenorhabditis elegans Hypothetical
           protein C17H1.10 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 306 DQCSEWGFEIDSRTKWNTFNSCC 374
           D CSE   +ID   +W+ F+S C
Sbjct: 218 DDCSEMSNKIDQCMEWSDFHSVC 240


>AL137227-10|CAB76717.1|  391|Caenorhabditis elegans Hypothetical
           protein F58D5.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +1

Query: 322 GVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTA--SHNPXGADEDFGIKFNCSNGGPA 495
           G  KL    +   +  A  Y+++KYK+ G  V  A   ++P  A   F  K   SN    
Sbjct: 226 GDPKLSSPSDPFFTRSATDYLVQKYKSSGKQVTVAILGNDPIWAQNLFHDKIGKSNYFSK 285

Query: 496 SDATTDAIY 522
            + ++DAI+
Sbjct: 286 FNNSSDAIF 294


>AL132848-6|CAB76731.1|  391|Caenorhabditis elegans Hypothetical
           protein F58D5.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +1

Query: 322 GVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTA--SHNPXGADEDFGIKFNCSNGGPA 495
           G  KL    +   +  A  Y+++KYK+ G  V  A   ++P  A   F  K   SN    
Sbjct: 226 GDPKLSSPSDPFFTRSATDYLVQKYKSSGKQVTVAILGNDPIWAQNLFHDKIGKSNYFSK 285

Query: 496 SDATTDAIY 522
            + ++DAI+
Sbjct: 286 FNNSSDAIF 294


>AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical
           protein T11F1.8 protein.
          Length = 888

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 211 LDVNKTSLIGSTLVVGGDGRYLVK 282
           L  N TS++G  +V   DGRYL K
Sbjct: 346 LPENCTSIVGDVVVDANDGRYLYK 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,249
Number of Sequences: 27780
Number of extensions: 301646
Number of successful extensions: 744
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)