Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1143
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 31 0.93
02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753 30 1.2
08_02_1194 + 25147935-25149455 29 2.8
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 5.0
10_02_0006 + 4096094-4096987,4098937-4098951 28 6.6
06_03_0173 - 17519768-17521285 28 6.6
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 28 6.6
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005... 28 6.6
08_02_0350 + 16123139-16124041 27 8.7
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +1
Query: 319 DEGAFGEECVSTMGKKGTCKSFRDCYPLFKVADLSGWDGWVMGHYDTCSYISADNMEVFG 498
+E G + +S K KSF YP+ + D D WV HY + D +++ G
Sbjct: 236 EENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQDDWV--HYAKMTEEIGDQVQIVG 293
Query: 499 --VCCTEPLLP 525
+ T P P
Sbjct: 294 DDLLVTNPTFP 304
>02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753
Length = 232
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 379 SFRDCYPLFKVADLSGWDGW-VMGHYDTCSYISADNM 486
SFR P+ D WDGW VMG DT + DNM
Sbjct: 152 SFRGALPMVVRRDTMHWDGWFVMGDDDTVFF--PDNM 186
>08_02_1194 + 25147935-25149455
Length = 506
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 388 DCYPLFKVADLSGWDGWVMGHYDT 459
D +P + DL GW W YDT
Sbjct: 223 DLFPFLRPLDLQGWRRWAEKRYDT 246
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 290 FCYCKLDSNQTRALSARNVYRQWARRVHAKVSGIVIHCL 406
F Y L N RAL R+ R+H V V+ CL
Sbjct: 129 FKYLGLSRNPARALQVYGAIRENPTRIHVSVCNSVLGCL 167
>10_02_0006 + 4096094-4096987,4098937-4098951
Length = 302
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 265 NSTRDGKQLLLLQARQQSDEGAFGEECVSTMGKKGTCKSFRDCYPLFKVADLSGW 429
+ST + L L +S E F E V M + G C + D +P ADL GW
Sbjct: 184 SSTIFSRNLTSLDDHGESME--FKEVVVEIM-EAGGCPNVSDFFPAIAAADLQGW 235
>06_03_0173 - 17519768-17521285
Length = 505
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 388 DCYPLFKVADLSGWDGWVMGH 450
D +P + DL GW W GH
Sbjct: 224 DLFPFLRRFDLQGWRRWTSGH 244
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 356 IVDTHSSPKAPSSDCCLAC 300
IVD H S KA S D CLAC
Sbjct: 258 IVDFHRSCKACSYDLCLAC 276
>02_04_0597 -
24198112-24198462,24199249-24199389,24200322-24200537,
24200626-24201561,24201655-24201816,24202026-24202304,
24202399-24203171,24206142-24207363
Length = 1359
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 313 QSDEGAFGEECVSTMGKKGTCKSFRDCYPLFKVADLSGWDGWVMGHYDTCSYISADN 483
Q+ G+ S+ G G R C+ LF+V+ L+ G H D+ ADN
Sbjct: 259 QATSGSSASALPSSAGGSGVPDGDRGCWCLFRVSILNQKPGGSHIHKDSYGRFGADN 315
>08_02_0350 + 16123139-16124041
Length = 300
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 430 DGWVMGHYDTCSYISADNMEVFGVCCTEPLLPLL 531
DGW M H S + + F C+ PL P L
Sbjct: 225 DGWPMAHVLPSSIVDNAALRAFLTSCSRPLPPAL 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,408,615
Number of Sequences: 37544
Number of extensions: 379361
Number of successful extensions: 825
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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