Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1143
(600 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC045667-1|AAH45667.1| 957|Homo sapiens sorting nexin 13 protein. 31 2.3
BC022060-1|AAH22060.1| 319|Homo sapiens Similar to sorting nexi... 31 2.3
AF420470-1|AAL37728.1| 957|Homo sapiens RGS-PX1 protein. 31 2.3
AF121862-1|AAD27835.1| 362|Homo sapiens sorting nexin 13 protein. 31 2.3
BC082974-1|AAH82974.1| 1151|Homo sapiens PLEKHG4 protein protein. 31 4.1
BC063501-1|AAH63501.1| 1191|Homo sapiens PLEKHG4 protein protein. 31 4.1
BC054486-1|AAH54486.1| 1110|Homo sapiens PLEKHG4 protein protein. 31 4.1
AK024475-1|BAB15765.1| 1194|Homo sapiens FLJ00068 protein protein. 31 4.1
AB197663-1|BAE07054.1| 1191|Homo sapiens puratrophin-1 protein. 31 4.1
AK125163-1|BAC86068.1| 320|Homo sapiens protein ( Homo sapiens ... 30 7.1
AB067496-1|BAB67802.2| 1287|Homo sapiens KIAA1909 protein protein. 30 7.1
>BC045667-1|AAH45667.1| 957|Homo sapiens sorting nexin 13 protein.
Length = 957
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 253 VLIGLHGH*SQLHRQYKTRHLLRKIHNLFRAHSRYR*RIDQPKAPQIE 110
V + L G L QYK R L K+H+ + +Y+ ++ +AP ++
Sbjct: 908 VYVFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQTTQAPSLQ 955
>BC022060-1|AAH22060.1| 319|Homo sapiens Similar to sorting nexin
13 protein.
Length = 319
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 253 VLIGLHGH*SQLHRQYKTRHLLRKIHNLFRAHSRYR*RIDQPKAPQIE 110
V + L G L QYK R L K+H+ + +Y+ ++ +AP ++
Sbjct: 270 VYVFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQTTQAPSLQ 317
>AF420470-1|AAL37728.1| 957|Homo sapiens RGS-PX1 protein.
Length = 957
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 253 VLIGLHGH*SQLHRQYKTRHLLRKIHNLFRAHSRYR*RIDQPKAPQIE 110
V + L G L QYK R L K+H+ + +Y+ ++ +AP ++
Sbjct: 908 VYVFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQTTQAPSLQ 955
>AF121862-1|AAD27835.1| 362|Homo sapiens sorting nexin 13 protein.
Length = 362
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 253 VLIGLHGH*SQLHRQYKTRHLLRKIHNLFRAHSRYR*RIDQPKAPQIE 110
V + L G L QYK R L K+H+ + +Y+ ++ +AP ++
Sbjct: 313 VYVFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQTTQAPSLQ 360
>BC082974-1|AAH82974.1| 1151|Homo sapiens PLEKHG4 protein protein.
Length = 1151
Score = 30.7 bits (66), Expect = 4.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 133 GLFVICSGNVPETDYGFSSKDGAFYTDDAIVINAHVDRSKRDTTNSTRDGKQLLLLQ 303
G++ + S N P +D SS F+ D + H+D + R GK LLLQ
Sbjct: 779 GMYALYSKNKPRSDALMSSYGHTFFKDKQQALGDHLDLASYLLKPIQRMGKYALLLQ 835
>BC063501-1|AAH63501.1| 1191|Homo sapiens PLEKHG4 protein protein.
Length = 1191
Score = 30.7 bits (66), Expect = 4.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 133 GLFVICSGNVPETDYGFSSKDGAFYTDDAIVINAHVDRSKRDTTNSTRDGKQLLLLQ 303
G++ + S N P +D SS F+ D + H+D + R GK LLLQ
Sbjct: 819 GMYALYSKNKPRSDALMSSYGHTFFKDKQQALGDHLDLASYLLKPIQRMGKYALLLQ 875
>BC054486-1|AAH54486.1| 1110|Homo sapiens PLEKHG4 protein protein.
Length = 1110
Score = 30.7 bits (66), Expect = 4.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 133 GLFVICSGNVPETDYGFSSKDGAFYTDDAIVINAHVDRSKRDTTNSTRDGKQLLLLQ 303
G++ + S N P +D SS F+ D + H+D + R GK LLLQ
Sbjct: 738 GMYALYSKNKPRSDALMSSYGHTFFKDKQQALGDHLDLASYLLKPIQRMGKYALLLQ 794
>AK024475-1|BAB15765.1| 1194|Homo sapiens FLJ00068 protein protein.
Length = 1194
Score = 30.7 bits (66), Expect = 4.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 133 GLFVICSGNVPETDYGFSSKDGAFYTDDAIVINAHVDRSKRDTTNSTRDGKQLLLLQ 303
G++ + S N P +D SS F+ D + H+D + R GK LLLQ
Sbjct: 822 GMYALYSKNKPRSDALMSSYGHTFFKDKQQALGDHLDLASYLLKPIQRMGKYALLLQ 878
>AB197663-1|BAE07054.1| 1191|Homo sapiens puratrophin-1 protein.
Length = 1191
Score = 30.7 bits (66), Expect = 4.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 133 GLFVICSGNVPETDYGFSSKDGAFYTDDAIVINAHVDRSKRDTTNSTRDGKQLLLLQ 303
G++ + S N P +D SS F+ D + H+D + R GK LLLQ
Sbjct: 819 GMYALYSKNKPRSDALMSSYGHTFFKDKQQALGDHLDLASYLLKPIQRMGKYALLLQ 875
>AK125163-1|BAC86068.1| 320|Homo sapiens protein ( Homo sapiens
cDNA FLJ43173 fis, clone FCBBF3007540, weakly similar
to GUANINE NUCLEOTIDE EXCHANGE FACTOR DBS. ).
Length = 320
Score = 29.9 bits (64), Expect = 7.1
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 133 GLFVICSGNVPETDYGFSSKDGAFYTDDAIVINAHVDRSKRDTTNSTRDGKQLLLLQ 303
G++VI S N P++D SS AF+ D + +D + R K LLLQ
Sbjct: 83 GMYVIYSKNKPQSDALLSSHGNAFFKDKQRELGDKMDLASYLLRPVQRVAKYALLLQ 139
>AB067496-1|BAB67802.2| 1287|Homo sapiens KIAA1909 protein protein.
Length = 1287
Score = 29.9 bits (64), Expect = 7.1
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 133 GLFVICSGNVPETDYGFSSKDGAFYTDDAIVINAHVDRSKRDTTNSTRDGKQLLLLQ 303
G++VI S N P++D SS AF+ D + +D + R K LLLQ
Sbjct: 908 GMYVIYSKNKPQSDALLSSHGNAFFKDKQRELGDKMDLASYLLRPVQRVAKYALLLQ 964
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,307,176
Number of Sequences: 237096
Number of extensions: 2068680
Number of successful extensions: 4581
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4581
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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