Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1143
         (600 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001436-1|AAN71191.1|  819|Drosophila melanogaster GH24467p pro...    29   6.4  
AE014296-2920|AAF49332.2|  819|Drosophila melanogaster CG7571-PA...    29   6.4  
BT024205-1|ABC86267.1|  280|Drosophila melanogaster RE43632p pro...    28   8.4  

>BT001436-1|AAN71191.1|  819|Drosophila melanogaster GH24467p
           protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 299 CKLDSNQTRALSARNVYRQWARRVHAKVSGIVIHCLKLPTFLAGMVG 439
           C L  NQT + S  N  RQ  +  H+K++ IV+ C+   + L+  +G
Sbjct: 304 CILGGNQTHSGSECNEERQLEQASHSKITVIVL-CIFFGSLLSSGIG 349


>AE014296-2920|AAF49332.2|  819|Drosophila melanogaster CG7571-PA
           protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 299 CKLDSNQTRALSARNVYRQWARRVHAKVSGIVIHCLKLPTFLAGMVG 439
           C L  NQT + S  N  RQ  +  H+K++ IV+ C+   + L+  +G
Sbjct: 304 CILGGNQTHSGSECNEERQLEQASHSKITVIVL-CIFFGSLLSSGIG 349


>BT024205-1|ABC86267.1|  280|Drosophila melanogaster RE43632p
           protein.
          Length = 280

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = +1

Query: 193 DGAFYTDDAIVINAHVDRSKRDTTNS---TRDGKQLLLLQARQQSDEGAFGEECVSTMGK 363
           D    + DA+ I  H +  KRD  +    TR G Q LLL  R Q     F  + + T  +
Sbjct: 195 DAEAISPDAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQ--VWHFMLQYLDTCEE 252

Query: 364 KGTCKSFRDCYPLFKVADLSGWDG 435
           +G   S  +C  +      S W G
Sbjct: 253 RGI--SLPECLSMLFQLSFSTWAG 274


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,983,315
Number of Sequences: 53049
Number of extensions: 654581
Number of successful extensions: 1522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)