Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1142
         (600 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023035-1|AAY55451.1|  345|Drosophila melanogaster IP11040p pro...   197   8e-51
AE014297-1419|AAF54729.1|  345|Drosophila melanogaster CG18547-P...   197   8e-51
AY118797-1|AAM50657.1|  342|Drosophila melanogaster GH17980p pro...   181   8e-46
AE014297-1421|AAF54731.1|  342|Drosophila melanogaster CG3397-PA...   181   8e-46
AE014297-1420|AAF54730.1|  294|Drosophila melanogaster CG12224-P...   117   1e-26
AE014296-2149|AAN11869.2|  310|Drosophila melanogaster CG10638-P...    33   0.30 
AY118937-1|AAM50797.1|  329|Drosophila melanogaster LD24679p pro...    29   6.4  
AE014297-683|AAF54175.1|  329|Drosophila melanogaster CG2767-PA ...    29   6.4  

>BT023035-1|AAY55451.1|  345|Drosophila melanogaster IP11040p
           protein.
          Length = 345

 Score =  197 bits (481), Expect = 8e-51
 Identities = 90/174 (51%), Positives = 124/174 (71%)
 Frame = +1

Query: 28  MRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGS 207
           M Y  LG TG++VS +S G  A    YG +D +  ++ + E++  GINY++T PWYGQG 
Sbjct: 22  MEYRNLGKTGLQVSKVSFGGGALCANYG-FDLEEGIKTVHEAVKSGINYIDTAPWYGQGR 80

Query: 208 SEKVIGKALVGVPRDSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDLI 387
           SE+V+G AL  VPR+SYYI +KV RY+ D  KMFDFSA+KT   ++ +L LLGLDYVD+I
Sbjct: 81  SEEVLGLALKDVPRESYYIATKVARYELDYDKMFDFSAKKTRESVEKSLKLLGLDYVDVI 140

Query: 388 QVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKEVVEESGSQ 549
           Q+HDI FA D  +V+ ETLP LEQ V++GKARFIG++ Y I ++KE +  +  +
Sbjct: 141 QIHDIEFAKDLDIVINETLPTLEQLVKEGKARFIGVSAYPISVLKEFLTRTAGR 194


>AE014297-1419|AAF54729.1|  345|Drosophila melanogaster CG18547-PA
           protein.
          Length = 345

 Score =  197 bits (481), Expect = 8e-51
 Identities = 90/174 (51%), Positives = 124/174 (71%)
 Frame = +1

Query: 28  MRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGS 207
           M Y  LG TG++VS +S G  A    YG +D +  ++ + E++  GINY++T PWYGQG 
Sbjct: 22  MEYRNLGKTGLQVSKVSFGGGALCANYG-FDLEEGIKTVHEAVKSGINYIDTAPWYGQGR 80

Query: 208 SEKVIGKALVGVPRDSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDLI 387
           SE+V+G AL  VPR+SYYI +KV RY+ D  KMFDFSA+KT   ++ +L LLGLDYVD+I
Sbjct: 81  SEEVLGLALKDVPRESYYIATKVARYELDYDKMFDFSAKKTRESVEKSLKLLGLDYVDVI 140

Query: 388 QVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKEVVEESGSQ 549
           Q+HDI FA D  +V+ ETLP LEQ V++GKARFIG++ Y I ++KE +  +  +
Sbjct: 141 QIHDIEFAKDLDIVINETLPTLEQLVKEGKARFIGVSAYPISVLKEFLTRTAGR 194


>AY118797-1|AAM50657.1|  342|Drosophila melanogaster GH17980p
           protein.
          Length = 342

 Score =  181 bits (440), Expect = 8e-46
 Identities = 80/170 (47%), Positives = 121/170 (71%), Gaps = 1/170 (0%)
 Frame = +1

Query: 28  MRYNELGTTGIKVSHISVGSAAFSNIYGK-YDEKRSLELIKESLNLGINYLETGPWYGQG 204
           M Y +LG+TG++VS I++G A  S ++   +D +  +  ++E++  GINY++T P+YGQG
Sbjct: 22  MEYRQLGSTGLRVSKIALGGATLSKLFSDDFDREEGILTVQEAIRSGINYIDTAPFYGQG 81

Query: 205 SSEKVIGKALVGVPRDSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDL 384
            SE+++G+AL  VPR++YYI +KV RY+ D   MFD++A K    +  +L LL LD VD+
Sbjct: 82  KSEELLGQALKDVPREAYYIATKVARYELDPNNMFDYTAAKARESVKRSLELLQLDRVDV 141

Query: 385 IQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKEVVE 534
           +QVHD+  AP   +VL ET+PVLE+ V+ GKARFIG+  YD+D++KE  E
Sbjct: 142 LQVHDVDAAPSLDMVLNETIPVLEEYVQAGKARFIGVTAYDVDVLKECAE 191


>AE014297-1421|AAF54731.1|  342|Drosophila melanogaster CG3397-PA
           protein.
          Length = 342

 Score =  181 bits (440), Expect = 8e-46
 Identities = 80/170 (47%), Positives = 121/170 (71%), Gaps = 1/170 (0%)
 Frame = +1

Query: 28  MRYNELGTTGIKVSHISVGSAAFSNIYGK-YDEKRSLELIKESLNLGINYLETGPWYGQG 204
           M Y +LG+TG++VS I++G A  S ++   +D +  +  ++E++  GINY++T P+YGQG
Sbjct: 22  MEYRQLGSTGLRVSKIALGGATLSKLFSDDFDREEGILTVQEAIRSGINYIDTAPFYGQG 81

Query: 205 SSEKVIGKALVGVPRDSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDL 384
            SE+++G+AL  VPR++YYI +KV RY+ D   MFD++A K    +  +L LL LD VD+
Sbjct: 82  KSEELLGQALKDVPREAYYIATKVARYELDPNNMFDYTAAKARESVKRSLELLQLDRVDV 141

Query: 385 IQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKEVVE 534
           +QVHD+  AP   +VL ET+PVLE+ V+ GKARFIG+  YD+D++KE  E
Sbjct: 142 LQVHDVDAAPSLDMVLNETIPVLEEYVQAGKARFIGVTAYDVDVLKECAE 191


>AE014297-1420|AAF54730.1|  294|Drosophila melanogaster CG12224-PA
           protein.
          Length = 294

 Score =  117 bits (282), Expect = 1e-26
 Identities = 55/108 (50%), Positives = 75/108 (69%)
 Frame = +1

Query: 211 EKVIGKALVGVPRDSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDLIQ 390
           E+ I  AL  VPR++YYI +KV RY  D   MFD+SA+K    +  +L  L LD VD++Q
Sbjct: 55  EEGILMALKDVPREAYYIATKVARYGLDPKNMFDYSADKARESVKRSLERLQLDRVDILQ 114

Query: 391 VHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKEVVE 534
           VHD+  AP+  +VL ET+PVLE+ V+ GKARFIG+  YD+D++KE  E
Sbjct: 115 VHDVDAAPNLDIVLNETIPVLEEYVQAGKARFIGVTAYDVDVLKECAE 162


>AE014296-2149|AAN11869.2|  310|Drosophila melanogaster CG10638-PB,
           isoform B protein.
          Length = 310

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
 Frame = +1

Query: 109 GKYDEKRSL--ELIKESLNLGINYLETGPWYGQGSSEKVIGKALVGVPRDSYYIGSKVGR 282
           G Y+ K+S     +  +L +G  +++T   Y    +E +IGK L  +  D      +V  
Sbjct: 21  GTYNLKKSRCEAAVCHALEMGYRHIDTAYLY---RNEGIIGKVLAKLIGDQKLKREQVFL 77

Query: 283 YDKDTLKMFDFSAEKTAA--GLDNTLSLLGLDYVDLIQVHD---ITFAPDTSVVLKE--- 438
                 K++D   E        D  L LLG+DY+DL  +H    + +  D  ++  E   
Sbjct: 78  ----VTKLWDIYHEPKMVKYACDMQLKLLGVDYIDLYLMHSPVGVDYISDEDLMPHENGQ 133

Query: 439 ----------TLPVLEQAVRDGKARFIGIADYDIDLMKEVVE 534
                     T   +EQ V  G  R +G+++++ + +K ++E
Sbjct: 134 LRTNDVDYVDTYRSMEQLVHLGLVRSLGLSNFNANQLKRLLE 175


>AY118937-1|AAM50797.1|  329|Drosophila melanogaster LD24679p
           protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
 Frame = +1

Query: 142 IKESLNLGINYLETGPWYGQGSSEKVIGKAL-----VG-VPRDSYYIGSKVGRYDKDTLK 303
           I  +L  G  +++T P YG   +EK IG+ L      G V R+  +I +KV       + 
Sbjct: 34  IDAALEAGYRHIDTAPVYG---NEKAIGRVLKRWLDAGKVKREELFIVTKV-----PPVS 85

Query: 304 MFDFSAEKTAAGLDNTLSLLGLDYVDLIQVH 396
                 E T   +  +L  L LDYVDL  VH
Sbjct: 86  NRPHEVEPT---IKKSLEDLQLDYVDLYLVH 113


>AE014297-683|AAF54175.1|  329|Drosophila melanogaster CG2767-PA
           protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
 Frame = +1

Query: 142 IKESLNLGINYLETGPWYGQGSSEKVIGKAL-----VG-VPRDSYYIGSKVGRYDKDTLK 303
           I  +L  G  +++T P YG   +EK IG+ L      G V R+  +I +KV       + 
Sbjct: 34  IDAALEAGYRHIDTAPVYG---NEKAIGRVLKRWLDAGKVKREELFIVTKV-----PPVS 85

Query: 304 MFDFSAEKTAAGLDNTLSLLGLDYVDLIQVH 396
                 E T   +  +L  L LDYVDL  VH
Sbjct: 86  NRPHEVEPT---IKKSLEDLQLDYVDLYLVH 113


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.315    0.135    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,984,833
Number of Sequences: 53049
Number of extensions: 493171
Number of successful extensions: 955
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)