Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1141
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0158 + 17822049-17822151,17822230-17822443,17822540-178227...    32   0.31 
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315...    28   5.0  
11_06_0580 - 25184019-25184024,25184096-25184851,25184870-251849...    28   6.7  
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550...    28   6.7  
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255     27   8.8  

>03_04_0158 +
           17822049-17822151,17822230-17822443,17822540-17822700,
           17822811-17822956,17824048-17824110,17824199-17824291,
           17824313-17824396,17824736-17824897,17824998-17825104,
           17825715-17825812,17825940-17826208
          Length = 499

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 22/91 (24%), Positives = 41/91 (45%)
 Frame = -1

Query: 337 VMCLLFRLSIKCDTSGTTISL*VFALDSVVSTDRIISACLLGTLNS*LSPMSLGLSASVH 158
           ++ +LF+  +K   +G   SL +F   S+V         L G L S L  + +G++  +H
Sbjct: 202 ILIILFQ-GMKLLPTGRKSSLAIFVYSSLVGMTTYFLHYLSGLLRSVL--VEIGIAEDMH 258

Query: 157 LTHTFGXYGREKAG*GQSCHSSSQITSFMQI 65
              T+G +    +     CH   +   FM++
Sbjct: 259 NPVTYGSFATSVSTFNYMCHMEERALPFMEL 289


>04_04_1397 -
           33230416-33230742,33230852-33231007,33231130-33231543,
           33234177-33234307,33235076-33235202,33235709-33236209,
           33237624-33237935,33238690-33238719
          Length = 665

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 333 CVYSLDCQSN-VTRAVPRYPCKSLHWIQLSQLIG 235
           CV+   CQ +   R++PR P   L W+Q++   G
Sbjct: 562 CVHQRYCQDDGELRSLPRCPHSHLSWVQITGFFG 595


>11_06_0580 -
           25184019-25184024,25184096-25184851,25184870-25184927,
           25185306-25185376
          Length = 296

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -1

Query: 574 CLLASMLLNPYVFFKS----LMILMIWSSYLSKDSYPVLMAGML 455
           CL+   LL   VF K     ++ +++W +YLS DS  V + G L
Sbjct: 40  CLVVVFLLFAAVFRKRCRSRVLSVLLWLAYLSADSVAVFVLGRL 83


>03_02_0080 +
           5498638-5498699,5499121-5499190,5499551-5500711,
           5500940-5501029,5501147-5501464
          Length = 566

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 228 DIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITD 341
           D I+ + TT+++    +D+   LVSH IDS+ SK  TD
Sbjct: 138 DSIIVLGTTKAHLPWSEDL--KLVSHCIDSIASKASTD 173


>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
          Length = 965

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 463 PPSGLGMNPSTNTRTKSSVSSMT*RTHMDSTTSKPASKS 579
           PPS LG++PS N   +  +SS         TTS   S+S
Sbjct: 384 PPSSLGLSPSVNGVNRGILSSSVEVLSSAMTTSAMQSRS 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,920,766
Number of Sequences: 37544
Number of extensions: 361575
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)