Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1140
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   1.4  
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po...    28   1.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.5  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    26   7.5  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   9.9  

>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 145 FVRHYKVKSYTVCITNKNLTLRTFFTPPHRPIRNFVPNFVPKMLNRFSCHQWLVVLTNGS 324
           F+ +    S+ VC+  + L  + F   P   +++   +  P   ++FS  QWLV  T+G 
Sbjct: 62  FLVYRTTYSFGVCLMKRFLFNKFFNRHPFTRVKSCFSSSSP---SKFSFTQWLVGFTDGD 118

Query: 325 G 327
           G
Sbjct: 119 G 119


>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 539 NSTPVAGGAMVKTRRWYHLEQFLRALAMEHAVQNTEGTEVP 417
           +STP   G +V    + H+  + + L   H V+NT G E P
Sbjct: 67  SSTPKPSGTVVNIEAYGHV--YKQTLWNSHCVENTPGCEFP 105


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 489 IPTSRFYHRTARHRSRVHPYYLEPLRSPTV 578
           IP+ R  H+  R   RVH   ++PL  P V
Sbjct: 842 IPSLRDLHKPTRPLKRVHWQRVDPLPGPNV 871


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 491 YHLEQFLRALAMEHAVQNTEGTEVPPQTQRLQTI 390
           Y LEQ L+   +EH +  TE  + PP+  R++T+
Sbjct: 86  YGLEQQLKTNPLEHPILITEPFDNPPE-NRVKTL 118


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/53 (18%), Positives = 20/53 (37%)
 Frame = -3

Query: 378 SNELCYLYNXXXXXXXXXXXXSQHYQPLMTAEPVKHFWNEVWNEVPYGTMRRG 220
           S  +C+ ++             Q+     T +    FW E W + P+ ++  G
Sbjct: 276 SYNMCHFWSNFEIANFKFFRNEQYENFFRTMDATGGFWTERWGDAPFHSLAAG 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,522,861
Number of Sequences: 5004
Number of extensions: 76323
Number of successful extensions: 189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)