Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1140
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1100 + 34530132-34530485,34530544-34530705                       31   1.1  
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741...    29   3.4  
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590...    29   5.9  

>01_06_1100 + 34530132-34530485,34530544-34530705
          Length = 171

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 516 TARHRSRVHPYYLEPLRSPTVRFQRSFLPRTIRLWNELPSTVF 644
           +A+H    H   L+ L+ PT + +   +   + L+NEL ST+F
Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147


>04_03_0618 -
           18071612-18072795,18073007-18073072,18074101-18074175,
           18074234-18074963
          Length = 684

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 403 LWVCGGTSVPSVFCTACSMASALRNC 480
           LW+CGG +    +C+A S A+ +R+C
Sbjct: 10  LWLCGGIAA---YCSAASAATCVRSC 32


>04_04_0827 - 28457858-28458028,28458513-28458669,28458984-28459083,
            28459204-28459231,28459321-28459396,28461276-28461355,
            28461642-28461805,28461897-28462056,28462154-28462277,
            28462901-28463941,28464141-28464259,28464512-28464823,
            28465222-28465425,28466068-28466751,28467301-28467474
          Length = 1197

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = +1

Query: 133  KNVIFVRHYKVKSYTVCIT------NKNLTLRTFFTPPHRPIRNFVPNFVPKMLNRFSCH 294
            K + F +HY   S  +C+       N +  +R F +   +PI   + + + + L   SC 
Sbjct: 1058 KFITFYQHYNSISIAICLIYHGAVFNIHFNIRCFLSAETKPIAAIINSILQQALELRSCF 1117

Query: 295  QWLVVLTNGSGRYRN*DNYI 354
            + L  ++  + +  N D+ I
Sbjct: 1118 KSLNYISESTVKQLNLDSLI 1137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,962,394
Number of Sequences: 37544
Number of extensions: 545746
Number of successful extensions: 1265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)