Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1140
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical pr...    32   0.43 
Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical pr...    32   0.43 
AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guany...    32   0.43 
AF016418-7|AAK18898.1|  248|Caenorhabditis elegans Hypothetical ...    30   2.3  
U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical protein
            F57F5.2 protein.
          Length = 945

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 718  AKPXPTGLILSHKPRLK-KDMS*RSGNTVEGSSFHSRMVRGKKD 590
            AKP  T  +L+ K   K K  S  +G++V  SS HS  +R KKD
Sbjct: 876  AKPTTTRRLLNQKDLEKEKKRSSMAGSSVTSSSAHSHSIRSKKD 919


>Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical protein
            F57F5.2 protein.
          Length = 945

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 718  AKPXPTGLILSHKPRLK-KDMS*RSGNTVEGSSFHSRMVRGKKD 590
            AKP  T  +L+ K   K K  S  +G++V  SS HS  +R KKD
Sbjct: 876  AKPTTTRRLLNQKDLEKEKKRSSMAGSSVTSSSAHSHSIRSKKD 919


>AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guanylyl
            cyclase GCY-33 protein.
          Length = 945

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 718  AKPXPTGLILSHKPRLK-KDMS*RSGNTVEGSSFHSRMVRGKKD 590
            AKP  T  +L+ K   K K  S  +G++V  SS HS  +R KKD
Sbjct: 876  AKPTTTRRLLNQKDLEKEKKRSSMAGSSVTSSSAHSHSIRSKKD 919


>AF016418-7|AAK18898.1|  248|Caenorhabditis elegans Hypothetical
           protein C49G7.3 protein.
          Length = 248

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
 Frame = +1

Query: 406 WVCGGTSVPSVFCTACSMASA-LRNCSR*YQRLVFTIAPPATGVEFIHTTWSHCGHPQCV 582
           + C  T+ P+       M SA L+NC+R       T       V+F   T S   + QC 
Sbjct: 76  FACYTTATPTPAPVVPDMRSAALKNCARTCGLCCKTSDFDCPNVQFPRLTCSTITNEQCR 135

Query: 583 S---RDLFC-HVPSGYGMSSPPRCFPSAMTCPSSNEACGRV 693
           S   R +     PS  G  +   C    M C +    CG V
Sbjct: 136 SSVWRTIIATDCPSACGFCNQGGCVDGVMDCANDLSICGAV 176


>U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical
           protein C02F12.8 protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 568 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMT 660
           HPQ V++ +  HVP G    +PP+  P+  T
Sbjct: 162 HPQIVNQPMHPHVPVGSQNYNPPQFVPAPPT 192


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 553 WSHCGHPQCVSRDLFCH 603
           WS C HP CV+  +F H
Sbjct: 12  WSRCVHPSCVAWVIFIH 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,734,373
Number of Sequences: 27780
Number of extensions: 443096
Number of successful extensions: 1115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)