Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1140
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   3.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   3.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   3.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.0  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 612 GWYVAKKISGNALWVTAVAPGSMDELYSG-GGRCDGKNE 499
           GW +  +I  N L    + PG+   L+ G G +  G NE
Sbjct: 13  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNE 48


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 612 GWYVAKKISGNALWVTAVAPGSMDELYSG-GGRCDGKNE 499
           GW +  +I  N L    + PG+   L+ G G +  G NE
Sbjct: 18  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNE 53


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 612 GWYVAKKISGNALWVTAVAPGSMDELYSG-GGRCDGKNE 499
           GW +  +I  N L    + PG+   L+ G G +  G NE
Sbjct: 18  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNE 53


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 528 RSRVHPYYLEP-LRSPTVRFQRSFLPRTIRLWNELPSTV 641
           +S++H +   P  RSP+ + Q S  P+T  L +   ST+
Sbjct: 668 QSQLHLHLTSPPARSPSSQAQASQCPQTASLLSSTHSTL 706


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 466 HSPWNMRYKIQREPKSL 416
           H PWN    +QR  K +
Sbjct: 462 HEPWNAPLNVQRAAKCI 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,403
Number of Sequences: 438
Number of extensions: 6044
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)