Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1138
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 381 e-107
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 377 e-106
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 192 4e-50
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 157 2e-39
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.44
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 4.1
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 26 5.4
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.4
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 7.2
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 26 7.2
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 381 bits (937), Expect = e-107
Identities = 169/239 (70%), Positives = 200/239 (83%)
Frame = +2
Query: 83 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 262
MRE IS+H+GQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 442
+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 443 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 622
+IR++AD C+GLQGFLVFH LL+ERL+++Y KKSKL+FS+YPAPQVST+
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 623 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 799
VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSIT
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSIT 239
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 377 bits (928), Expect = e-106
Identities = 172/244 (70%), Positives = 203/244 (83%), Gaps = 5/244 (2%)
Frame = +2
Query: 83 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSD-----KTLGGGDDSFNTFFSE 247
MRE ISVH+GQAGVQIGNACWELYCLEHGI PDG P++ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 248 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 427
TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 428 DVVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAP 607
D VL+RIR++AD C+GLQGFLVFH LL+ERL+++YGKKS L+FS+YPAP
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAP 179
Query: 608 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 787
QVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+V
Sbjct: 180 QVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVV 239
Query: 788 SSIT 799
SSIT
Sbjct: 240 SSIT 243
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 192 bits (469), Expect = 4e-50
Identities = 93/239 (38%), Positives = 136/239 (56%)
Frame = +2
Query: 83 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 262
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGGK 58
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 442
+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 443 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 622
+R+ A+ C LQGF + H LL+ ++ +Y + FS+ PAP+ S
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDT 178
Query: 623 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 799
VVEPYN+ L+ H +E+SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T
Sbjct: 179 VVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVT 237
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 157 bits (381), Expect = 2e-39
Identities = 86/241 (35%), Positives = 134/241 (55%), Gaps = 3/241 (1%)
Frame = +2
Query: 86 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKH 265
RE I++ GQ G QIG+ W+ CLEHGI PDG + S T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 266 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDVVL 439
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 440 DRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQ-VS 616
D I + AD L+GF + H L+ERL+ Y KK +S++P Q VS
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVS 179
Query: 617 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 796
VV+PYNS+L ++D ++DN A+ I L + PT+ N+L+ ++S+
Sbjct: 180 DVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSAS 239
Query: 797 T 799
T
Sbjct: 240 T 240
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.44
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Frame = +3
Query: 129 LATPAGSCTASSMESSLMV-RCRQIRPSAVETTPLTRSSARPARESTCHELSLLIWNQL* 305
++T TAS SS+ V ++P + +TP++ SS+ + +ST S ++ +++
Sbjct: 452 ISTSVKQPTASVASSSVSVPSSSSVQPQS--STPISSSSSASSPQSTLSTSSEVV-SEVS 508
Query: 306 STRFVPALTV---NCSTPSSSSLAKRMLPITMPEDTIPLARRS 425
ST + + + STPSSS ++ M + +IP + S
Sbjct: 509 STLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSS 551
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 129 LATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSS 242
++TPA + S+ + + PS+ +TTP + SS
Sbjct: 618 VSTPASNSNTGSLNGTSSFNVNSVGPSSSQTTPTSSSS 655
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.1
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +3
Query: 159 SSMESSLMVRCRQIRPSAVETTPLTRSSARPARESTCHELSLLIWNQL*STRFVPALTVN 338
SS SSL +PS T+ T SSA P S+ S L + + S+ P+ + +
Sbjct: 172 SSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS----SYLSSSSVVSSSSSPS-SSS 226
Query: 339 CSTPSSSSLAKRMLPIT 389
ST +SSSL+ +P T
Sbjct: 227 SSTLTSSSLSTSSIPST 243
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/91 (21%), Positives = 39/91 (42%)
Frame = +3
Query: 90 NASPFTSVKPAYRLATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSSARPARESTC 269
N++ TSV + SS+ S+ + ++ +TPL+ ++ A ++
Sbjct: 395 NSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASS 454
Query: 270 HELSLLIWNQL*STRFVPALTVNCSTPSSSS 362
LS + S P +VN +T +S+S
Sbjct: 455 TPLSSVNSTTATSASSTPLTSVNSTTATSAS 485
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 525 DSHHF*WSVSPLTTERSPSLSFPSILLHRCPQR 623
D HH+ S + T SP +P I++HR +R
Sbjct: 751 DWHHYALSFNHYTHFTSPIRRYPDIIVHRLLER 783
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 204 PSAVETTPLTRSSARP--ARESTCHELSLLIWNQL*STRFVPALTVNCSTPSSSSLAKRM 377
PS E P + P + S+ LSLL + L + P+ N S P S +R+
Sbjct: 120 PSTPELPPSSSPLLPPNGSESSSPIPLSLLSTSSLQQRKITPSNLSNTSKPMDSKQLERL 179
Query: 378 LPI 386
+P+
Sbjct: 180 IPV 182
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +3
Query: 90 NASPFTSVKPAYRLATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSSARPAREST 266
N F+ + + + T +S ++ + ++PS VE T +R++A+ EST
Sbjct: 8 NTPKFSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTEST 66
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 527 IRSRFHLRTSETRGNPEALCIGPPAS*SCPKLRLRSPCQW 408
++ RF + + T N E I PP + PK RL S +W
Sbjct: 42 LKKRF-IGSKATTSNSEQKEISPPVTSGAPKHRLFSKDEW 80
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -1
Query: 659 CGWSGSSCKVPLPLWTPVEQDRWKTQA---WTSFRSQRRDAPSEVM*IRS-RFHLRTS-E 495
CG + C++ L + P+E D K +A W R P+ ++ +R R L++ E
Sbjct: 51 CGNCKNLCRLLLQCYAPLEGDNLKERALYVWGCHNPSCRRVPNSIVCVRGVRLPLKSDIE 110
Query: 494 TRGNPEAL 471
+P+A+
Sbjct: 111 AVKSPKAI 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,366
Number of Sequences: 5004
Number of extensions: 69369
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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