Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1137
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.83 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.83 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.5  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        23   2.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 806 PSSPLQNGYRQPTQTDIQFPCRDPR 732
           P  P  +G   P QT+++F   DP+
Sbjct: 335 PGVPGDHGDHAPKQTEVRFKVHDPK 359


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 806 PSSPLQNGYRQPTQTDIQFPCRDPR 732
           P  P  +G   P QT+++F   DP+
Sbjct: 335 PGVPGDHGDHAPKQTEVRFKVHDPK 359


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 210 YADMQFRIVLTLSSVTYTLRTLIP 281
           Y+D+ F I +   ++ YT+  +IP
Sbjct: 236 YSDITFNITMRRKTLFYTVNLIIP 259


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 153 CTCFDMWSNKVLRSKPPIFY 212
           C   D+++N + +SKP +FY
Sbjct: 4   CLYLDVYTNSLDQSKPVMFY 23


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 210 YADMQFRIVLTLSSVTYTLRTLIP 281
           Y D+ F I L   ++ YT+  +IP
Sbjct: 223 YPDIVFNITLRRKTLFYTVNLIIP 246


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 392 EKGVSTEDTLEVEYLER 442
           ++  + +DTLE++YLER
Sbjct: 386 DRPATFQDTLEMKYLER 402


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 210 YADMQFRIVLTLSSVTYTLRTLIP 281
           Y D+ F I +   ++ YT+  +IP
Sbjct: 231 YLDITFNITMRRKTLFYTVNIIIP 254


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 210 YADMQFRIVLTLSSVTYTLRTLIP 281
           Y D+ F I +   ++ YT+  +IP
Sbjct: 231 YLDITFNITMRRKTLFYTVNIIIP 254


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 210 YADMQFRIVLTLSSVTYTLRTLIP 281
           Y D+ F I +   ++ YT+  +IP
Sbjct: 227 YLDITFNITMRRKTLFYTVNLIIP 250


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 210 YADMQFRIVLTLSSVTYTLRTLIP 281
           Y D+ F I L   ++ YT+  ++P
Sbjct: 222 YPDIFFNITLRRKTLFYTVNLIVP 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,657
Number of Sequences: 438
Number of extensions: 4998
Number of successful extensions: 32
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)