Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1136
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    27   3.1  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    27   4.1  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    26   5.4  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   5.4  

>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 82  LAQAKSARHNHTFADAERL-AEERLMAGLSDKHTDISNGPLQLGLENK 222
           LA A+  RH  TF++ ERL  + ++   + ++  D    P  L  + K
Sbjct: 44  LAHARRQRHGRTFSEDERLEVKNKVQEEVKEESEDEEEDPAMLRADPK 91


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 10  GXLDELRQRTVSQMQKKI-DSLQEELAQAKSARHNHTFADAERLAEE 147
           G L E  ++T  +   K+ ++ +EE+A   +++ N + AD+   AEE
Sbjct: 158 GSLSEDDRKTYEEEASKLREAYEEEMAAYNASKENASVADSRVTAEE 204


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = +1

Query: 22  ELRQRTVSQMQKKIDSLQEELAQAK--SARHNHTFADAERLAEERLMAGLSDKHTDISNG 195
           E  Q  VSQM K++DSL E+L + K    R +  F    R   + L A   D  T +   
Sbjct: 193 ETFQNQVSQMSKQLDSL-EKLCERKDEEIRSSQAFNMTLREENDTLAAQNLDLQTQLDR- 250

Query: 196 PLQLGLENK*HLETGSLYKAMSSDHSYPESD 288
            LQ  L+        S  K + +    PE++
Sbjct: 251 -LQRELDTNIRSNVKSKPKKIVTTGGIPENN 280


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = -1

Query: 266 SLDIALYKLPVSKCYLFSKPSCNGPLLISVCLSDKPXXXXXXXXXXXXANV*LCRADLAC 87
           S+  A+++ PVS+CYL    +C+  +L  + LS +                   R +L+ 
Sbjct: 174 SIQDAMHRFPVSECYLACLKACS--ILAQLFLSKETLMLSFRSLLQTKDQYAEFREELSG 231

Query: 86  ASSSCNE 66
           A+++C++
Sbjct: 232 ATTNCDK 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,787
Number of Sequences: 5004
Number of extensions: 59169
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)