Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1136
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658...    31   0.81 
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906...    31   1.1  
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991...    28   7.5  
11_03_0009 - 8907870-8907948,8908211-8908317,8908457-8908672,891...    28   7.5  
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    28   7.5  
09_06_0026 + 20312364-20312687,20312780-20312950                       28   9.9  

>02_04_0454 +
           23064081-23064139,23064297-23064366,23064553-23065815,
           23065946-23066515
          Length = 653

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -3

Query: 339 YRITVSIGARRMLPTRAVALRIGMITRHRFVQASCFQVLFIFQAE-L*RSVADIRMFIRQ 163
           Y ITV++ AR ++P R  A  +GM       + +    L  F A  L R   D    +  
Sbjct: 90  YGITVTVSARNLVPLRCAAAHLGM--SEAADRGNLAAKLDAFLASCLLRRWKDALAVLNS 147

Query: 162 TRHQSFLGETLGVGERVI 109
           TRH + L E +G+  R +
Sbjct: 148 TRHCAPLCEDIGLTSRCV 165


>02_03_0313 -
           17590109-17590148,17590254-17590382,17590479-17590612,
           17590779-17590841,17590920-17591070,17593372-17593424,
           17593483-17593629,17593839-17594163,17594240-17594409,
           17595252-17595453,17596065-17596273,17597051-17597260,
           17597360-17597489,17599664-17600402,17600411-17600531
          Length = 940

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
 Frame = +1

Query: 16  LDELR--QRTVSQ----MQKKIDSLQEELAQAKSARHNHTFADAE--RLAEERLMAGLSD 171
           +D+LR  QRT++      Q +   ++EE  +A  A H    A+ +   LAEE+    L +
Sbjct: 477 VDDLRDQQRTLTDGLTNAQMRWHDIREEKLKASGAVHKFQKAEEDLGHLAEEKEKLTLEE 536

Query: 172 KHTDISNGPL 201
           KH + S GPL
Sbjct: 537 KHLEESLGPL 546


>12_01_0978 +
           9908001-9908175,9908538-9908619,9910793-9910904,
           9911965-9913737
          Length = 713

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 16  LDELRQRTVSQMQKKIDSLQEELAQAKSARHNHTFADAERLAEE 147
           L E  ++   Q++K+I ++QE L   K+A       +A+ LAE+
Sbjct: 265 LAETNKQKADQLRKEIATIQESLTHVKAATEQAHEEEAQILAEK 308


>11_03_0009 -
           8907870-8907948,8908211-8908317,8908457-8908672,
           8910810-8911490,8911656-8911901
          Length = 442

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +1

Query: 289 CPCR*HAARSYTYGYSI-NNYKFVKDSHPLLLLP----PV*KESNFVIVARSC 432
           C  + H  R     Y +   Y +V   + + LLP     V K SN+++VA SC
Sbjct: 156 CNGQLHIGRGEEVSYGVMGGYDYVHQRYTVRLLPLAHHAVQKNSNYIVVATSC 208


>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
            14397510-14397609
          Length = 2033

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 31   QRTVSQMQKKIDSLQEELAQAKSARHNHTFADAERLAEERLMAGLSDKHTDISN 192
            +  +S +QKK   + E L Q +    NH  A    +  E  +A L DK+ D+ N
Sbjct: 1107 EEQISSLQKKSYYMNELLEQEQE---NHMSASINVVILENCLADLKDKNVDLFN 1157


>09_06_0026 + 20312364-20312687,20312780-20312950
          Length = 164

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 328 GYSINNYKFVKDSHPLLLLPPV*KESNFVIVARSCISFH 444
           G+  +++ F++D   L+ LPP   +  FV++ +  I+FH
Sbjct: 74  GFGAHDWWFIRDGG-LVTLPPPPPQDEFVMMMQPMIAFH 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,208,130
Number of Sequences: 37544
Number of extensions: 341095
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)