Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1136
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 30 1.7
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 29 3.9
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 29 3.9
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 29 3.9
Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical pr... 29 5.1
U28971-8|AAD31046.2| 767|Caenorhabditis elegans Related to isle... 29 5.1
AJ245560-1|CAB52188.1| 767|Caenorhabditis elegans IDA-1 protein... 29 5.1
AF126740-1|AAK14908.1| 767|Caenorhabditis elegans IA2 protein. 29 5.1
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 245 KLPVSKCYLFSKPSCNGPLLISVCLSD 165
K V+ CYL P N PL I+VCL D
Sbjct: 116 KYDVNYCYLLLTPGKNLPLRIAVCLPD 142
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 4 NSGXLDELRQRTVSQMQKKIDSLQEELAQAKSA--RHNHTFADAERLAEERLMAGLSDKH 177
N+ L ++++ +++Q + L E L + K++ R ADA+RLAEE H
Sbjct: 1726 NNAALSAMKRKVENEVQIARNELDEYLNELKASEERARKAAADADRLAEEVRQEQEHAVH 1785
Query: 178 TDISNGPLQL 207
D L+L
Sbjct: 1786 VDRQRKSLEL 1795
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 4 NSGXLDELRQRTVSQMQKKIDSLQEELAQAKSA--RHNHTFADAERLAEERLMAGLSDKH 177
N+ L ++++ +++Q + L E L + K++ R ADA+RLAEE H
Sbjct: 1726 NNAALSAMKRKVENEVQIARNELDEYLNELKASEERARKAAADADRLAEEVRQEQEHAVH 1785
Query: 178 TDISNGPLQL 207
D L+L
Sbjct: 1786 VDRQRKSLEL 1795
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 4 NSGXLDELRQRTVSQMQKKIDSLQEELAQAKSA--RHNHTFADAERLAEERLMAGLSDKH 177
N+ L ++++ +++Q + L E L + K++ R ADA+RLAEE H
Sbjct: 1726 NNAALSAMKRKVENEVQIARNELDEYLNELKASEERARKAAADADRLAEEVRQEQEHAVH 1785
Query: 178 TDISNGPLQL 207
D L+L
Sbjct: 1786 VDRQRKSLEL 1795
>Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical
protein K03A11.4 protein.
Length = 664
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +2
Query: 128 PSVSPRKD*WRVCLINIRISATDRYSSAWKINSTWKQEACTKRCRVIIPIRRATARVGSM 307
P V+P K+ + C + + T +S+WKI +T K C RC RR +G
Sbjct: 93 PYVNPNKNPLKNCDTSF-VPFTALQNSSWKIVNTNKNLECRARCHTRKSDRR--NHIGEW 149
Query: 308 RRAP 319
R P
Sbjct: 150 MRTP 153
>U28971-8|AAD31046.2| 767|Caenorhabditis elegans Related to islet
cell diabetesautoantigen protein 1 protein.
Length = 767
Score = 28.7 bits (61), Expect = 5.1
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = -2
Query: 571 GWMVLR*LSKYLTTPTSTEYKWTALQKNKN*NKDFSY*TVDESEMRYKNARQ*RN*IPFK 392
G +VL L +YL+ PT E +W ++ +N + T ++E K A Q R +PF
Sbjct: 485 GHVVLNFLQEYLSEPTKIEAQWNGIKDYRNEER-----TKTKAE---KFASQNRTILPFD 536
Query: 391 LEGVTVTDVSPLQTYNYLSNNRKYRSAP-HATYTGSRSP 278
V + + YL+ + Y P A Y +++P
Sbjct: 537 DNIVDIDGKTAENEDFYLNASFIYDDDPRQAVYIAAQTP 575
>AJ245560-1|CAB52188.1| 767|Caenorhabditis elegans IDA-1 protein
protein.
Length = 767
Score = 28.7 bits (61), Expect = 5.1
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = -2
Query: 571 GWMVLR*LSKYLTTPTSTEYKWTALQKNKN*NKDFSY*TVDESEMRYKNARQ*RN*IPFK 392
G +VL L +YL+ PT E +W ++ +N + T ++E K A Q R +PF
Sbjct: 485 GHVVLNFLQEYLSEPTKIEAQWNGIKDYRNEER-----TKTKAE---KFASQNRTILPFD 536
Query: 391 LEGVTVTDVSPLQTYNYLSNNRKYRSAP-HATYTGSRSP 278
V + + YL+ + Y P A Y +++P
Sbjct: 537 DNIVDIDGKTAENEDFYLNASFIYDDDPRQAVYIAAQTP 575
>AF126740-1|AAK14908.1| 767|Caenorhabditis elegans IA2 protein.
Length = 767
Score = 28.7 bits (61), Expect = 5.1
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = -2
Query: 571 GWMVLR*LSKYLTTPTSTEYKWTALQKNKN*NKDFSY*TVDESEMRYKNARQ*RN*IPFK 392
G +VL L +YL+ PT E +W ++ +N + T ++E K A Q R +PF
Sbjct: 485 GHVVLNFLQEYLSEPTKIEAQWNGIKDYRNEER-----TKTKAE---KFASQNRTILPFD 536
Query: 391 LEGVTVTDVSPLQTYNYLSNNRKYRSAP-HATYTGSRSP 278
V + + YL+ + Y P A Y +++P
Sbjct: 537 DNIVDIDGKTAENEDFYLNASFIYDDDPRQAVYIAAQTP 575
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,409,243
Number of Sequences: 27780
Number of extensions: 327929
Number of successful extensions: 757
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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